src/arcade/patch/agent/cell/PatchCellCARTCD8.java|17 col 1| Missing a Javadoc comment.
src/arcade/patch/agent/cell/PatchCellCARTCD8.java|75 col 13| 'if' construct must use '{}'s.
src/arcade/patch/agent/cell/PatchCellCARTCD8.java|77 col 9| 'if' construct must use '{}'s.
src/arcade/patch/agent/cell/PatchCellCARTCD8.java|166 col 21| 'if' construct must use '{}'s.
src/arcade/patch/agent/cell/PatchCell.java|570 col 55| 'flag' hides a field.
src/arcade/patch/agent/cell/PatchCellCARTCD4.java|16 col 1| Missing a Javadoc comment.
src/arcade/patch/agent/cell/PatchCellCARTCD4.java|75 col 13| 'if' construct must use '{}'s.
src/arcade/patch/agent/cell/PatchCellCARTCD4.java|77 col 9| 'if' construct must use '{}'s.
src/arcade/patch/agent/cell/PatchCellCARTCD4.java|164 col 21| 'if' construct must use '{}'s.
src/arcade/patch/agent/process/PatchProcessInflammationCD8.java|9 col 1| Missing a Javadoc comment.
src/arcade/patch/agent/process/PatchProcessInflammationCD8.java|10| First sentence should end with a period.
src/arcade/patch/agent/process/PatchProcessInflammationCD8.java|13| First sentence should end with a period.
src/arcade/patch/agent/process/PatchProcessInflammationCD8.java|14 col 23| Name 'GRANZ_SYNTHESIS_DELAY' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/process/PatchProcessInflammationCD8.java|16| First sentence should end with a period.
src/arcade/patch/agent/process/PatchProcessInflammationCD8.java|41 col 5| Class 'PatchProcessInflammationCD8' looks like designed for extension (can be subclassed), but the method 'stepProcess' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammationCD8' final or making the method 'stepProcess' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/patch/agent/process/PatchProcessInflammationCD8.java|41 col 5| Missing a Javadoc comment.
src/arcade/patch/agent/process/PatchProcessInflammationCD8.java|57 col 16| Name 'IL2Env' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/process/PatchProcessInflammation.java|40 col 32| Name 'IL2RBGa' must match pattern '^[A-Z][A-Z0-9](_[A-Z0-9]+)$'.
src/arcade/patch/agent/process/PatchProcessInflammation.java|46 col 32| Name 'IL2_IL2RBGa' must match pattern '^[A-Z][A-Z0-9](_[A-Z0-9]+)$'.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|17| First sentence should end with a period.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|18 col 26| Name 'IL2_PROD_RATE_ACTIVE' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|20| First sentence should end with a period.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|21 col 26| Name 'IL2_PROD_RATE_IL2' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|23| First sentence should end with a period.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|24 col 23| Name 'IL2_SYNTHESIS_DELAY' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|26| First sentence should end with a period.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|27 col 20| Name 'IL2ProdRate' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|29| First sentence should end with a period.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|30 col 20| Name 'IL2Produced' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|32| First sentence should end with a period.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|36 col 20| Name 'IL2EnvTesting' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/process/PatchProcessInflammationCD4.java|79 col 16| Name 'IL2Env' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/module/PatchModuleProliferation.java|115 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleMigration.java|58 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/action/PatchActionTreat.java|43| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionTreat.java|46| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionTreat.java|49| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionTreat.java|55| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionTreat.java|56 col 20| Name 'max_damage' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/action/PatchActionTreat.java|58| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionTreat.java|59 col 26| Name 'min_damage_radius' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/action/PatchActionTreat.java|61| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionTreat.java|64| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionTreat.java|70| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionTreat.java|73| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionTreat.java|150 col 9| switch without "default" clause.
src/arcade/patch/agent/action/PatchActionTreat.java|173 col 35| 'coord' hides a field.
src/arcade/patch/agent/action/PatchActionTreat.java|183 col 23| Name 'G' must match pattern '^[a-z][a-zA-Z0-9]$'.
src/arcade/patch/agent/action/PatchActionTreat.java|225 col 5| Missing a Javadoc comment.
src/arcade/patch/agent/action/PatchActionTreat.java|258 col 5| Missing a Javadoc comment.
src/arcade/patch/agent/action/PatchActionTreat.java|287 col 24| 'coord' hides a field.
src/arcade/patch/agent/action/PatchActionTreat.java|308 col 5| Class 'PatchActionTreat' looks like designed for extension (can be subclassed), but the method 'checkLocationSpace' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchActionTreat' final or making the method 'checkLocationSpace' static/final/abstract/empty, or adding allowed annotation for the method.
src/arcade/patch/agent/action/PatchActionTreat.java|308 col 5| Missing a Javadoc comment.
src/arcade/patch/agent/action/PatchActionTreat.java|319 col 9| '}' at column 9 should be on the same line as the next part of a multi-block statement (one that directly contains multiple blocks: if/else-if/else, do/while or try/catch/finally).
src/arcade/patch/agent/action/PatchActionTreat.java|322 col 9| '}' at column 9 should be on the same line as the next part of a multi-block statement (one that directly contains multiple blocks: if/else-if/else, do/while or try/catch/finally).
src/arcade/patch/agent/action/PatchActionKill.java|28| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionKill.java|31| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionKill.java|34| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionKill.java|37| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionKill.java|52 col 33| Expected @param tag for 'random'.
src/arcade/patch/agent/action/PatchActionKill.java|53 col 20| Expected @param tag for 'series'.
src/arcade/patch/agent/action/PatchActionKill.java|54 col 24| Expected @param tag for 'parameters'.
src/arcade/patch/agent/action/PatchActionReset.java|25| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionReset.java|28| First sentence should end with a period.
src/arcade/patch/agent/action/PatchActionReset.java|40 col 50| Expected @param tag for 'random'.
src/arcade/patch/agent/action/PatchActionReset.java|40 col 65| Expected @param tag for 'series'.
src/arcade/patch/agent/action/PatchActionReset.java|40 col 84| Expected @param tag for 'parameters'.
src/arcade/patch/sim/output/PatchOutputSerializer.java|148 col 15| Comment matches to-do format 'TODO:'.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|31 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|32 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|33 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|34 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|35 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesPattern.java|36 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java|31 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java|32 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java|33 col 9| Missing a Javadoc comment.
src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java|34 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|48 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|49 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|50 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|51 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|52 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|53 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|54 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|55 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|60 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|61 col 9| Missing a Javadoc comment.
src/arcade/patch/vis/PatchDrawer.java|62 col 9| Missing a Javadoc comment.
src/arcade/core/gui/GUI.java|374 col 5| Class XMLFileFilter should be declared as final.
src/arcade/potts/sim/PottsSeries.java|215 col 15| Comment matches to-do format 'TODO:'.
src/arcade/potts/vis/PottsVisualization.java|174 col 5| Method create3DDrawers length is 277 lines (max allowed is 150).
src/arcade/potts/vis/PottsDrawer.java|41 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|42 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|43 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|48 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|49 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|50 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|51 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|52 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|53 col 9| Missing a Javadoc comment.
src/arcade/potts/vis/PottsDrawer.java|54 col 9| Missing a Javadoc comment.
test/arcade/patch/agent/cell/PatchCellCARTTest.java|70 col 5| Class 'PatchCellCARTTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchCellCARTTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
test/arcade/patch/agent/cell/PatchCellCARTTest.java|88 col 9| Empty statement.
test/arcade/patch/agent/cell/PatchCellCARTCD8Test.java|30 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/cell/PatchCellCARTCD8Test.java|31 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/cell/PatchCellCARTCD8Test.java|32 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/cell/PatchCellCARTCD8Test.java|34 col 5| Class 'PatchCellCARTCD8Test' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchCellCARTCD8Test' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
test/arcade/patch/agent/cell/PatchCellCARTCD8Test.java|49 col 9| Empty statement.
test/arcade/patch/agent/cell/PatchCellCARTCD4Test.java|30 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/cell/PatchCellCARTCD4Test.java|31 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/cell/PatchCellCARTCD4Test.java|32 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/cell/PatchCellCARTCD4Test.java|34 col 5| Class 'PatchCellCARTCD4Test' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchCellCARTCD4Test' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
test/arcade/patch/agent/cell/PatchCellCARTCD4Test.java|49 col 9| Empty statement.
test/arcade/patch/agent/process/PatchProcessInflammationCD8Test.java|23 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD8Test.java|24 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD8Test.java|25 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD8Test.java|26 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD8Test.java|27 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD8Test.java|29 col 5| Class 'PatchProcessInflammationCD8Test' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammationCD8Test' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
test/arcade/patch/agent/process/PatchProcessInflammationTest.java|42 col 5| Class 'PatchProcessInflammationTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammationTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java|28 col 18| Name 'inflammationMock' must match pattern '^[A-Z][a-zA-Z0-9]$'.
test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java|29 col 9| Redundant 'public' modifier.
test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java|40 col 5| Class 'PatchProcessMetabolismCARTTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessMetabolismCARTTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
test/arcade/patch/agent/process/PatchProcessInflammationCD4Test.java|21 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD4Test.java|22 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD4Test.java|23 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD4Test.java|24 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD4Test.java|25 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD4Test.java|26 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD4Test.java|27 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/process/PatchProcessInflammationCD4Test.java|29 col 5| Class 'PatchProcessInflammationCD4Test' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammationCD4Test' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
test/arcade/patch/agent/action/PatchActionResetTest.java|26 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionResetTest.java|28 col 5| Class 'PatchActionResetTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchActionResetTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
test/arcade/patch/agent/action/PatchActionResetTest.java|51 col 9| Empty statement.
test/arcade/patch/agent/action/PatchActionKillTest.java|23 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionKillTest.java|24 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionKillTest.java|25 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionKillTest.java|26 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionKillTest.java|27 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionKillTest.java|29 col 5| Class 'PatchActionKillTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchActionKillTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
test/arcade/patch/agent/action/PatchActionTreatTest.java|17 col 33| Using the '.' form of import should be avoided - arcade.patch.env.location.*.
test/arcade/patch/agent/action/PatchActionTreatTest.java|27 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionTreatTest.java|28 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionTreatTest.java|29 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionTreatTest.java|30 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionTreatTest.java|31 col 5| 'VARIABLE_DEF' should be separated from previous line.
test/arcade/patch/agent/action/PatchActionTreatTest.java|33 col 5| Class 'PatchActionTreatTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchActionTreatTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.
test/arcade/potts/sim/Potts3DTest.java|1| File length is 2,371 lines (max allowed is 2,000).
test/arcade/potts/sim/Potts3DTest.java|211 col 18| ';' is followed by whitespace.