Skip to content

Issues: bernatgel/karyoploteR

New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

#

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

65 Open 95 Closed
65 Open 95 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Custom genome and GFF to informative manhattan plot
#161 opened Jan 31, 2025 by bioinfowheat
Broken documentation link in readme
#160 opened Jan 22, 2025 by jethror1
Add CRAM support for coverage plotting
#159 opened Jan 9, 2025 by FriederikeHanssen
Avoid point overlap
#158 opened Dec 12, 2024 by ywzhang071394
Question on Removing Cytoband Borders in karyoploteR usage question User question about how to use the package
#157 opened Nov 12, 2024 by hj-99
@bernatgel
3
kpPlotDensity log scaling? enhancement
#156 opened Oct 17, 2024 by aboyd003
@bernatgel
3
Align ideograms to the right side enhancement
#155 opened Oct 11, 2024 by abs-yy
@bernatgel
2
kpAddBaseNumbers incorrect first tick label if tick.dist is set to <= 1Mbp
#154 opened Aug 6, 2024 by JKing2000
kpPlotRainfall error when given a path to VCF file that contains other variants than SNVs
#153 opened Jun 14, 2024 by fawaz-dabbaghieh
makeGenesDataFromTxDb did not pick up gene in some region bug
#152 opened May 15, 2024 by h20gg702
@bernatgel
2
documentation of kpAxis
#151 opened May 2, 2024 by Mitmischer
Calculate gene densities seperately from plotting
#150 opened May 2, 2024 by Mitmischer
Merge kpPoints and kpPlotBigWig, the r0 r1 of kpPoints cannot be set correctly
#149 opened Mar 28, 2024 by HMU-ChaoWang
kpHeatmap Fails when only one y value that is not 1
#148 opened Feb 14, 2024 by drneavin
kpAddCytobandLabels with custom genome and cytoband file fails
#147 opened Feb 14, 2024 by pkerbs
3
Overlapping labels and huge gap between them
#145 opened Aug 30, 2023 by scienception
@bernatgel
1
CNV heatmap clustering and metadata enhancement
#144 opened Aug 15, 2023 by auroramaurizio
@bernatgel
2
highlighting telomeres (adding custom symbols to chromosome ends) enhancement
#140 opened May 9, 2023 by JWDebler
@bernatgel
3
plotting bedgraph data for all chromosome at once usage question User question about how to use the package
#139 opened May 5, 2023 by nirvana693
@bernatgel
6
kpPlotGenes: Overlapping gene names margin increase
#138 opened Apr 3, 2023 by Hanuphant
3
Change y-axis values usage question User question about how to use the package
#136 opened Feb 28, 2023 by pailloufat-stack
@bernatgel
How to get labels to not overlap other chromosomes? usage question User question about how to use the package
#129 opened Oct 22, 2022 by yonniejon
@bernatgel
2
kpHeatmap control colors
#125 opened Jun 5, 2022 by diyasen2021
Vary arch.height in kpPlotLinks enhancement
#124 opened Jun 1, 2022 by raunakms
@bernatgel
1
limit the coverage bar height almostthere enhancement
#121 opened Apr 29, 2022 by Rohit-Satyam
@bernatgel
4
ProTip! Type g i on any issue or pull request to go back to the issue listing page.