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Issues: bids-standard/pybids

RFC: PyBIDS 1.0 layout API
#989 opened Apr 25, 2023 by effigies
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90 Open 395 Closed
90 Open 395 Closed
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Issues list

sourcedata indexed on Windows bug windows
#1111 opened Dec 9, 2024 by kaare-mikkelsen
1
pybids documentation link error
#1103 opened Nov 22, 2024 by acsenrafilho
2
UPath kwargs are not persisted from layout root to BIDSFiles bug
#1098 opened Nov 11, 2024 by effigies
sqlite3.OperationalError: table associations already exists
#1079 opened Aug 11, 2024 by MRIDude
4
Unable to retrieve json sidecar based on entities of nifti (after replacing extension)
#1072 opened Jul 19, 2024 by psadil
1
MacOS Finder ._* hidden metadata files cause pybids to crash
#1069 opened Jun 20, 2024 by shnizzedy
1
BIDSLayoutIndexer's **filters argument not working as expected
#1062 opened May 10, 2024 by alperkent
6
Inherited metadata overrides immediate metadata for multi-echo data with same-named single-echo bug
#1044 opened Feb 19, 2024 by tsalo
1
Collect entity-linked files in get_associations enhancement
#1043 opened Feb 14, 2024 by tsalo
Custom configurations are not passed to derivatives indexer bug
#1020 opened Aug 28, 2023 by pierre-nedelec
9
Please support formulaic 0.6.0
#1000 opened May 2, 2023 by musicinmybrain
5
RFC: PyBIDS 1.0 layout API discussion
#989 opened Apr 25, 2023 by effigies
8
ohbm hackathon idea: pybids (+analysis) in the browser
#982 opened Apr 14, 2023 by adelavega
3
layout.get not returning subject directory paths for datasets with no session layer bug
#978 opened Apr 10, 2023 by alyssadai
3
Support BIDS-URIs
#950 opened Feb 23, 2023 by effigies
2 tasks
1
Use trailing undescore to disambiguate entity names from python keywords
#947 opened Feb 15, 2023 by pvandyken
4
Handle empty directories more gracefully bug
#925 opened Dec 5, 2022 by effigies
pip configparser error on osx
#921 opened Nov 23, 2022 by adelavega
5
Allow de-meaning with respect to mean of a group statsmodels Pertain to implementation of BEP-002 - BIDS StatsModels transformations
#909 opened Oct 31, 2022 by effigies
bids.BIDSLayout.build_path() discards dir- label for dwi images
#895 opened Sep 8, 2022 by ajschadler12
sync_kwargs
#889 opened Sep 6, 2022 by jdkent
Derivatives' configuration file missing some valuable entities
#880 opened Aug 3, 2022 by GalKepler
modeling: Add scan_length parameter to auto_model enhancement good for beginners
#868 opened Jun 7, 2022 by adelavega
variables: Add sparse/dense mode for to to_df, and add alternative design matrix API to access sparse variables statsmodels Pertain to implementation of BEP-002 - BIDS StatsModels variables
#865 opened Jun 1, 2022 by adelavega
@adelavega
3
layout.get(scope=...) still uses PipelineDescription
#864 opened May 29, 2022 by pvandyken
2
ProTip! Exclude everything labeled bug with -label:bug.