Please merge #546
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Please merge #546
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@deeptijk can you remove the prefix
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@daichengxin Please can you check the new files I have uploaded. |
daichengxin
requested changes
May 12, 2021
| Sample 7 Oryza sativa Flower not applicable not applicable 2 run 13 GZ63S PXD000923 LHY_T7.wiff http://ftp.pride.ebi.ac.uk/pride/data/archive/2014/07/PXD000923/raw_data.zip 7 1 NT=label free sample AC=MS:1000932;NT=TripleTOF 5600 AC=MS:1001251;NT=Trypsin NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Phospho;AC=UNIMOD:21;TA=S;MT=Variable NT=Phospho;AC=UNIMOD:21;TA=T;MT=Variable NT=Phospho;AC=UNIMOD:21;TA=Y;MT=Variable 15 ppm 0.05 Da | ||
| Sample 8 Oryza sativa Flower not applicable not applicable 2 run 15 GZ63S PXD000923 LHY_T8.wiff http://ftp.pride.ebi.ac.uk/pride/data/archive/2014/07/PXD000923/raw_data.zip 8 1 NT=label free sample AC=MS:1000932;NT=TripleTOF 5600 AC=MS:1001251;NT=Trypsin NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Phospho;AC=UNIMOD:21;TA=S;MT=Variable NT=Phospho;AC=UNIMOD:21;TA=T;MT=Variable NT=Phospho;AC=UNIMOD:21;TA=Y;MT=Variable 15 ppm 0.05 Da | ||
| Sample 9 Oryza sativa Flower not applicable not applicable 2 run 17 GZ63S PXD000923 LHY_T9.wiff http://ftp.pride.ebi.ac.uk/pride/data/archive/2014/07/PXD000923/raw_data.zip 9 1 NT=label free sample AC=MS:1000932;NT=TripleTOF 5600 AC=MS:1001251;NT=Trypsin NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Phospho;AC=UNIMOD:21;TA=S;MT=Variable NT=Phospho;AC=UNIMOD:21;TA=T;MT=Variable NT=Phospho;AC=UNIMOD:21;TA=Y;MT=Variable 15 ppm 0.05 Da | ||
| Sample 10 Oryza sativa Flower not applicable not applicable 2 run 19 GZ63S PXD000923 LHY_T10.wiff http://ftp.pride.ebi.ac.uk/pride/data/archive/2014/07/PXD000923/raw_data.zip 10 1 NT=label free sample AC=MS:1000932;NT=TripleTOF 5600 AC=MS:1001251;NT=Trypsin NT=Carbamidomethyl;AC=UNIMOD:4;TA=C;MT=Fixed NT=Oxidation;MT=Variable;TA=M;AC=UNIMOD:35 NT=Phospho;AC=UNIMOD:21;TA=S;MT=Variable NT=Phospho;AC=UNIMOD:21;TA=T;MT=Variable NT=Phospho;AC=UNIMOD:21;TA=Y;MT=Variable 15 ppm 0.05 Da |
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It seems that the first 5 files (run 1 - run 9 or run 11 - run 19)are from the same fraction group under a sample. So their source name should be the same. Other annotations look good.
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@daichengxin Please have a look into the datasets, At least 9 out of 10 looks ok, so if possible please merge it with the master. Thank you
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