Skip to content

Issues: bigdatagenomics/adam

New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

#

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

33 Open 1,168 Closed
33 Open 1,168 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Refactoring Error Logging Inconsistencies in MdTag.scala
#2401 opened Aug 2, 2024 by joonkang-git 1.0.2
Missing Fastq reads
#2385 opened Mar 24, 2023 by SidWeng
1
StackOverflowError in avro SpecificDatumWriter
#2349 opened Nov 29, 2021 by heuermh
1
Add Scala 2.13 to build
#2335 opened Oct 12, 2021 by heuermh
Spare not needed groupBy when calling toFragments() on AlignmentDataset
#2281 opened Nov 7, 2020 by benraha
4
Improve Ensembl VEP mapping to TranscriptEffect
#2279 opened Oct 28, 2020 by heuermh
1
saveAsSam converts null mapping qualities to 0 instead of 255
#2272 opened Sep 4, 2020 by heuermh
I'm failing to use this package
#2225 opened Oct 10, 2019 by Hoeze
11
Save as CRAM precondition incorrectly fails on sorted Parquet input
#2214 opened Sep 25, 2019 by heuermh
Refactor Dataset save methods for consistency
#2199 opened Aug 26, 2019 by heuermh
2
Add missing VariantContextDataset.save method
#2198 opened Aug 26, 2019 by heuermh
Ensembl Variant Effect Predictor annotations support
#2150 opened May 14, 2019 by znikasz
1
3
API doc links in readthedocs are broken
#2131 opened Feb 25, 2019 by akmorrow13
3
TypeError: 'JavaPackage' object is not callable
#2122 opened Feb 19, 2019 by Shekharrajak
13
s3a URL not working
#2096 opened Dec 5, 2018 by dekinsitro
5
Evenly Repartioning AlignmentRecordRDD fails with IllegalArgumentException on sorted RDD
#2063 opened Oct 11, 2018 by pauldwolfe
1
Cannot run pyadam adam-distribution-spark2_2.11-0.24.0 binary distribution
#2041 opened Aug 31, 2018 by mtdeguzis
4
Mark Duplicates implemented in Spark SQL
#2023 opened Jul 27, 2018 by jondeaton
1
Python/R pipe APIs return wrong GenomicRDD type bug
#2012 opened Jul 6, 2018 by fnothaft
@fnothaft
Startup scripts still don't resolve correctly when symlinks
#1973 opened Mar 28, 2018 by heuermh
Inconsistent counts for shuffleRegionJoin without Sequence Dictionaries
#1956 opened Mar 17, 2018 by heuermh
3
Timeout waiting for connection from pool for 1000 genomes vcf on AWS
#1951 opened Mar 11, 2018 by akmorrow13
9
Support loadIndexedBam from R enhancement
#1947 opened Mar 7, 2018 by fnothaft
Surface VariantContextRDD loaders in Python and R enhancement
#1945 opened Mar 7, 2018 by fnothaft
Pipe API without expectation that return value is GenomicRDD enhancement
#1788 opened Oct 30, 2017 by heuermh
5
ProTip! What’s not been updated in a month: updated:<2025-02-05.