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Bigginlab

Code from the Biggin Laboratory at the University of Oxford

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  1. ABFE_workflow ABFE_workflow Public

    This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.

    Python 45 17

  2. OxCompBio OxCompBio Public

    Materials for the oxford computational biochemistry course including python

    Jupyter Notebook 43 17

  3. WaterDock-2.0 WaterDock-2.0 Public

    WaterDock-2.0 implementation with Akshay Sridhar

    Python 15 8

  4. WaterDock_pymol WaterDock_pymol Public

    pymol implementation of WaterDock with Akshay Sridhar (@akshay-sridhar) and refactoring work by Patrick McCubbin (@mccubbinp)

    Python 10 7

  5. aescore aescore Public

    Forked from RMeli/aescore

    Learning Protein-Ligand Properties with Atomic Environment Vectors

    Python 9 8

  6. fragment-opt-abfe-benchmark fragment-opt-abfe-benchmark Public

    Forked from IAlibay/fragment-opt-abfe-benchmark

    Benchmark set for absolute binding free energy calculations of fragment optimisations

    Python 4 1

Repositories

Showing 10 of 25 repositories
  • AEV-PLIG Public Forked from oxpig/AEV-PLIG

    Fork of the AEV-PLIG Repo

    bigginlab/AEV-PLIG’s past year of commit activity
    Python 0 2 0 0 Updated Dec 10, 2024
  • ABFE_workflow Public

    This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.

    bigginlab/ABFE_workflow’s past year of commit activity
    Python 45 GPL-3.0 17 9 1 Updated Nov 3, 2024
  • spyrmsd Public Forked from RMeli/spyrmsd

    📐 Symmetry-corrected RMSD in Python

    bigginlab/spyrmsd’s past year of commit activity
    Python 3 MIT 7 0 0 Updated Nov 1, 2024
  • PoreAnalyser Public Forked from DSeiferth/PoreAnalyser

    PoreAnalyser is package written by @DSeiferth that expands HOLE results to consider asymmetry and estimate conductance

    bigginlab/PoreAnalyser’s past year of commit activity
    Python 1 LGPL-2.1 2 0 0 Updated Oct 14, 2024
  • PyCEC Public Forked from roncv/PyCEC

    PyCEC

    bigginlab/PyCEC’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 2, 2024
  • bee_alpha5 Public Forked from francoviscarra/bee_alpha5

    Simulation data for "Characterization of a novel nicotinic acetylcholine receptor subtype preferentially sensitive to biogenic amines"

    bigginlab/bee_alpha5’s past year of commit activity
    Shell 0 1 0 0 Updated Jul 17, 2024
  • bigginlab/NoiseEstimator’s past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated May 30, 2024
  • PyMEMENTO Public Forked from simonlichtinger/PyMEMENTO

    PyMEMENTO

    bigginlab/PyMEMENTO’s past year of commit activity
    Python 1 LGPL-3.0 4 0 0 Updated Apr 19, 2024
  • aescore Public Forked from RMeli/aescore

    Learning Protein-Ligand Properties with Atomic Environment Vectors

    bigginlab/aescore’s past year of commit activity
    Python 9 BSD-3-Clause 13 0 0 Updated Apr 19, 2024
  • WaterDock_pymol Public

    pymol implementation of WaterDock with Akshay Sridhar (@akshay-sridhar) and refactoring work by Patrick McCubbin (@mccubbinp)

    bigginlab/WaterDock_pymol’s past year of commit activity
    Python 10 GPL-3.0 7 0 0 Updated Mar 25, 2024

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