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Installation

John Sundh edited this page May 22, 2023 · 3 revisions

Installation options

  1. Install with conda:
conda install -c conda-forge -c bioconda coidb
  1. Download a release from the 'Releases' section, unpack it and install:
python -m pip install .
  1. Clone git repository and build
git clone https://github.com/johnne/coidb.git
python -m pip install .

Dependencies

This tool depends on software defined in the environment.yml file.

If you install the package with conda this also installs all requirements at the same time. If you instead install a release or clone the repo, please make sure that the required software is available in your PATH.

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