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Make compatible with .cram

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@litaifang litaifang released this 23 May 19:16
· 844 commits to master since this release
  • No guarantee if cram files are compatible with the individual mutation callers.
  • Also fixed a bug where variants called by Strelka only were not considered, though this would not change the results much as Strelka-only somatic calls are very rare.