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Set minimum number of presim points #18

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merged 4 commits into from
Aug 15, 2023
Merged

Set minimum number of presim points #18

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4ff0fa0
Set minimum number of presimulation points to 2.
luciansmith Aug 15, 2023
61452fc
Update version number.
luciansmith Aug 15, 2023
3004178
Fix lint.
luciansmith Aug 15, 2023
7e8cc5f
Use isinstance correctly (sigh).
luciansmith Aug 15, 2023
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2 changes: 1 addition & 1 deletion biosimulators_tellurium/_version.py
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Original file line number Diff line number Diff line change
@@ -1 +1 @@
__version__ = '0.1.39'
__version__ = '0.1.40'
5 changes: 3 additions & 2 deletions biosimulators_tellurium/core.py
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Original file line number Diff line number Diff line change
Expand Up @@ -268,6 +268,7 @@ def exec_sed_task(task, variables, preprocessed_task=None, log=None, config=None
(sim.output_end_time - sim.output_start_time) * sim.number_of_steps + 1

number_of_presim_points = round(number_of_presim_points) - sim.number_of_steps
number_of_presim_points = max(2, number_of_presim_points)
road_runner.simulate(sim.initial_time, sim.output_start_time, number_of_presim_points)

results = numpy.array(road_runner.simulate(sim.output_start_time, sim.output_end_time, sim.number_of_steps+1).tolist()).transpose()
Expand Down Expand Up @@ -310,10 +311,10 @@ def exec_sed_task(task, variables, preprocessed_task=None, log=None, config=None

def get_all_tasks_from_task(task):
ret = set()
if type(task) == Task:
if isinstance(task, Task):
ret.add(task)
return ret
elif type(task) == RepeatedTask:
elif isinstance(task, RepeatedTask):
for sub_task in task.sub_tasks:
submodels = get_all_tasks_from_task(sub_task.task)
ret.update(submodels)
Expand Down