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* 0.11.x ew ele (#103) * Make ew_ele datastructures type agnostic * New CI (drone-1.0) * fix bad indentation * minor fixes * syntaxfix * pip.conf * bash needed for echo -e ? * req. pycvodes >=0.11.11 * fix ew_ele in native pycvodes req. pycvodes>=0.11.12 * more generous timeout * up timeout * fix pytest cmdline * tweak CI (conda) * Simplify conda-recipe version string
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,55 +1,103 @@ | ||
| clone: | ||
| depth: 2 | ||
| recursive: true | ||
| submodule_override: | ||
| external/anyode: git://github.com/bjodah/anyode.git | ||
| cache: | ||
| mount: | ||
| - /drone/sund-3.2.1-klu | ||
| - /drone/sund-3.2.1-nolapack-noklu-extended | ||
| build: | ||
| image: bjodah/bjodahimg18dev:v1.4 | ||
| environment: | ||
| - OMP_NUM_THREADS=1 | ||
| - ANYODE_NUM_THREADS=2 | ||
| - CPLUS_INCLUDE_PATH=/usr/include/suitesparse | ||
| - LIBRARY_PATH=/usr/lib/x86_64-linux-gnu | ||
| - LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu | ||
| commands: | ||
| - git fetch -tq | ||
| - if [ ! -d /drone/sund-3.2.1-klu ]; then .ci/get_sundials.sh 3.2.1 /drone/sund-3.2.1-klu -DLAPACK_ENABLE:BOOL=ON -DSUNDIALS_INDEX_SIZE=32 -DKLU_ENABLE:BOOL=ON -DKLU_INCLUDE_DIR=/usr/include/suitesparse -DKLU_LIBRARY_DIR=/usr/lib/x86_64-linux-gnu; fi | ||
| - if [ ! -d /drone/sund-3.2.1-nolapack-noklu-extended ]; then .ci/get_sundials.sh 3.2.1 /drone/sund-3.2.1-nolapack-noklu-extended -DLAPACK_ENABLE:BOOL=OFF -DSUNDIALS_INDEX_SIZE=32 -DSUNDIALS_PRECISION:STRING="extended" -DKLU_ENABLE:BOOL=OFF; fi | ||
| # Need to install pycvodes from source for extended precision/int64 test, since | ||
| # that requires no LAPACK, whereas the pypi version installs with LAPACK | ||
| - git clone --recurse-submodules https://github.com/bjodah/pycvodes.git /drone/pycvodes | ||
| - cd /drone/pycvodes | ||
| - LIBRARY_PATH=/drone/sund-3.2.1-nolapack-noklu-extended/lib:$LIBRARY_PATH CPLUS_INCLUDE_PATH=/drone/sund-3.2.1-nolapack-noklu-extended/include:$CPLUS_INCLUDE_PATH LD_LIBRARY_PATH=/drone/sund-3.2.1-nolapack-noklu-extended/lib:$LD_LIBRARY_PATH PYCVODES_LAPACK=0 PYCVODES_NO_KLU=1 python3 setup.py install | ||
| - cd - | ||
| - .ci/run_ci.sh pyodesys /drone/sund-3.2.1-nolapack-noklu-extended | ||
| - rm -r /usr/local/lib/python*/dist-packages/pycvodes* | ||
| # Need to remove cache so that new sundials/pyodesys doesn't try to use the old | ||
| # compiled native code wrappers | ||
| - rm -r /root/.cache/*pyodesys* | ||
| # "Normal" (double, int) tests | ||
| - .ci/run_ci.sh pyodesys /drone/sund-3.2.1-klu | ||
| - ./scripts/prepare_deploy.sh | ||
| - .ci/test_py2.sh pyodesys /drone/sund-3.2.1-klu | ||
| - rm -r ~/.cache/python*pyodesys*/ | ||
| - git clean -fd | ||
| - # PATH=/opt/miniconda3/bin:$PATH conda config --add channels bjodah # sym, pyodesys, pyneqsys | ||
| - # PATH=/opt/miniconda3/bin:$PATH conda upgrade --quiet conda-build | ||
| - # PATH=/opt/miniconda3/bin:$PATH conda build --output-folder "deploy/public_html/branches/${CI_BRANCH}" conda-recipe | ||
| - bash -c '[[ $(python3 setup.py --version) =~ ^[0-9]+.* ]]' | ||
| - ./scripts/grep-for-merge-blocking-token.sh | ||
| - ./scripts/grep-for-binary-data.sh | ||
| default: | ||
| image: plugins/git | ||
| recursive: true | ||
| submodule_override: | ||
| external/anyode: git://github.com/bjodah/anyode.git | ||
|
|
||
| pipeline: | ||
| restore-cache: | ||
| image: drillster/drone-volume-cache | ||
| restore: true | ||
| mount: | ||
| - ./ci_cache/sund-3.2.1-klu | ||
| - ./ci_cache/sund-4.1.0-nolapack-noklu-extended | ||
| - ./ci_cache/conda_packages | ||
| - ./ci_cache/pip_cache | ||
| volumes: | ||
| - /tmp/cache:/cache | ||
| ttl: 90 # liftetime in days | ||
|
|
||
| test-sund-3.2.1-klu: | ||
| group: testing | ||
| image: bjodah/bjodahimg18:v1.5 | ||
| environment: | ||
| - OMP_NUM_THREADS=1 | ||
| - ANYODE_NUM_THREADS=2 | ||
| - CPLUS_INCLUDE_PATH=/usr/include/suitesparse | ||
| - LIBRARY_PATH=/usr/lib/x86_64-linux-gnu | ||
| - LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu | ||
| commands: | ||
| - export SUNDBASE=$(pwd)/ci_cache/sund-3.2.1-klu | ||
| - if [ ! -d $SUNDBASE ]; then .ci/get_sundials.sh 3.2.1 $SUNDBASE -DLAPACK_ENABLE:BOOL=ON -DSUNDIALS_INDEX_SIZE=32 -DKLU_ENABLE:BOOL=ON -DKLU_INCLUDE_DIR=/usr/include/suitesparse -DKLU_LIBRARY_DIR=/usr/lib/x86_64-linux-gnu; fi | ||
| - mkdir -p $HOME/.config/pip/; bash -c 'echo -e "[global]\nno-cache-dir = false\ndownload-cache = $(pwd)/ci_cache/pip_cache" >$HOME/.config/pip/pip.conf' | ||
| - bash -c "ulimit -v 2048000; .ci/run_ci.sh pyodesys $SUNDBASE" | ||
| - ./scripts/prepare_deploy.sh | ||
| - bash -c '[[ $(python3 setup.py --version) =~ ^[0-9]+.* ]]' | ||
| - ./scripts/grep-for-merge-blocking-token.sh | ||
| - ./scripts/grep-for-binary-data.sh | ||
|
|
||
| test-sund-4.1.0-nolapack-noklu-extended: | ||
| group: testing | ||
| image: bjodah/bjodahimg18:v1.5 | ||
| environment: | ||
| - OMP_NUM_THREADS=1 | ||
| - ANYODE_NUM_THREADS=2 | ||
| - CPLUS_INCLUDE_PATH=/usr/include/suitesparse | ||
| - LIBRARY_PATH=/usr/lib/x86_64-linux-gnu | ||
| - LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu | ||
| commands: | ||
| - export SUNDBASE=$(pwd)/ci_cache/sund-4.1.0-nolapack-noklu-extended | ||
| - if [ ! -d $SUNDBASE ]; then .ci/get_sundials.sh 4.1.0 $SUNDBASE -DLAPACK_ENABLE:BOOL=OFF -DSUNDIALS_INDEX_SIZE=32 -DSUNDIALS_PRECISION:STRING="extended" -DKLU_ENABLE:BOOL=OFF; fi | ||
| # Need to install pycvodes from source for extended precision/int64 test, since | ||
| # that requires no LAPACK, whereas the pypi version installs with LAPACK | ||
| - git clone --recurse-submodules https://github.com/bjodah/pycvodes.git /tmp/pycvodes | ||
| - cd /tmp/pycvodes | ||
| - LIBRARY_PATH=$SUNDBASE/lib:$LIBRARY_PATH CPATH=$SUNDBASE/include:$CPATH LD_LIBRARY_PATH=$SUNDBASE/lib:$LD_LIBRARY_PATH PYCVODES_LAPACK=0 PYCVODES_NO_KLU=1 python3 setup.py install | ||
| - cd - | ||
| - mkdir -p $HOME/.config/pip/; bash -c 'echo -e "[global]\nno-cache-dir = false\ndownload-cache = $(pwd)/ci_cache/pip_cache" >$HOME/.config/pip/pip.conf' | ||
| - bash -c "ulimit -v 2048000; .ci/run_ci.sh pyodesys $SUNDBASE" | ||
|
|
||
| test-py2: | ||
| image: bjodah/bjodahimg18:v1.5 | ||
| environment: | ||
| - OMP_NUM_THREADS=1 | ||
| - ANYODE_NUM_THREADS=2 | ||
| - CPLUS_INCLUDE_PATH=/usr/include/suitesparse | ||
| - LIBRARY_PATH=/usr/lib/x86_64-linux-gnu | ||
| - LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu | ||
| commands: | ||
| - export SUNDBASE=$(pwd)/ci_cache/sund-3.2.1-klu | ||
| - bash -c "ulimit -v 2048000; .ci/test_py2.sh pyodesys $SUNDBASE" | ||
|
|
||
| test-conda-recipe: | ||
| group: testing | ||
| image: bjodah/bjodahimg18dev:v1.5 | ||
| commands: | ||
| - export CONDA_PKGS_DIRS=$(pwd)/ci_cache/conda_packages | ||
| - PATH=/opt/miniconda3/bin:$PATH conda update conda-build | ||
| - PATH=/opt/miniconda3/bin:$PATH conda build --output-folder "deploy/public_html/branches/${CI_BRANCH}" conda-recipe | ||
|
|
||
| deploy: | ||
|
|
||
| rsync: | ||
| host: hera.physchem.kth.se | ||
| rebuild-cache: | ||
| image: drillster/drone-volume-cache | ||
| rebuild: true | ||
| mount: | ||
| - ./ci_cache/sund-3.2.1-klu | ||
| - ./ci_cache/sund-4.1.0-nolapack-noklu-extended | ||
| - ./ci_cache/conda_packages | ||
| - ./ci_cache/pip_cache | ||
| volumes: | ||
| - /tmp/cache:/cache | ||
|
|
||
| deploy: | ||
| image: drillster/drone-rsync | ||
| when: | ||
| event: [push] | ||
| hosts: [ "hera.physchem.kth.se" ] | ||
| port: 22 | ||
| user: pyodesys | ||
| source: deploy/ | ||
| target: ~ | ||
| recursive: true | ||
| delete: false | ||
| secrets: [ rsync_key ] # secret only set from event "push" not "pull_request" | ||
| source: ./deploy/public_html | ||
| target: ~/ |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -18,3 +18,5 @@ gks.svg | |
| .ipython/ | ||
| .jupyter/* | ||
| !.jupyter/jupyter_notebook_config.py | ||
| tmp/ | ||
| .gdb* | ||
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