fix: revert alpine base for SalmonTE Docker

boulardlab · Mar 6, 2024 · bfb4a48 · bfb4a48
1 parent 6e64c84
commit bfb4a48
Showing 1 changed file with 6 additions and 5 deletions.
diff --git a/assets/docker/salmonTE/Dockerfile b/assets/docker/salmonTE/Dockerfile
@@ -2,12 +2,12 @@
 
 FROM curlimages/curl:7.81.0
 WORKDIR /home/curl_user
-RUN curl -LO "https://github.com/hyunhwan-jeong/SalmonTE/archive/refs/heads/main.zip" && \
-    unzip main.zip && \
-    rm -r SalmonTE-main/example SalmonTE-main/test
+RUN curl -LO "https://github.com/ftabaro/SalmonTE/archive/refs/heads/master.zip" && \
+    unzip master.zip && \
+    rm -r SalmonTE-master/example SalmonTE-master/test
 
 
-FROM continuumio/miniconda3:23.3.1-0-alpine
+FROM continuumio/miniconda3:23.3.1-0
 RUN conda update -y -n base -c defaults conda; \
     conda config --add channels conda-forge; \
     conda config --add channels bioconda; \
@@ -25,4 +25,5 @@ RUN conda install -y  \
     bioconductor-deseq2
 
 WORKDIR /opt
-COPY --from=0 /home/curl_user/SalmonTE-main ./SalmonTE
+COPY --from=0 /home/curl_user/SalmonTE-master ./SalmonTE
+