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bali-phy: 4.0-beta16 #1957

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4 changes: 2 additions & 2 deletions Formula/bali-phy.rb
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Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@
desc "Bayesian co-estimation of phylogenies and multiple alignments"
homepage "https://www.bali-phy.org/"
url "https://github.com/bredelings/BAli-Phy.git",
tag: "4.0-beta15",
regision: "5ae1a597b6b594357b044bbab34920606084997e"
tag: "4.0-beta16",
revision: "a0fe2d0e67d7444a651dedcf6c9d80d8402b1ea3"
license "GPL-2.0-or-later"
head "https://github.com/bredelings/BAli-Phy.git", branch: "master"

Expand Down Expand Up @@ -37,7 +37,7 @@
fails_with gcc: "8"
fails_with gcc: "9"

def install

Check failure on line 40 in Formula/bali-phy.rb

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GitHub Actions / build-bottles (macos-13)

`brew install --verbose --formula --build-bottle brewsci/bio/bali-phy` failed on macOS Ventura (13)! 

In file included from ../src/computation/module.cc:5:
In file included from ../src/computation/module.H:9:
In file included from ../src/computation/expression/let.H:10:
In file included from ../src/computation/expression/var.H:9:
In file included from ../src/computation/optimization/occurrence_info.H:4:
../src/computation/haskell/core2.H:294:19: error: invalid operands to binary expression ('const std::string' (aka 'const basic_string<char, char_traits<char>, allocator<char>>') and 'const std::string')
            return (name <=> v2.name);
                    ~~~~ ^   ~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/__functional/operations.h:372:21: note: in instantiation of member function 'Core2::Var<>::operator<=>' requested here
        {return __x < __y;}
                    ^
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/__tree:1974:17: note: in instantiation of member function 'std::__map_value_compare<Core2::Var<>, std::__value_type<Core2::Var<>, Core2::Exp<>>, std::less<Core2::Var<>>>::operator()' requested here
            if (value_comp()(__v, __nd->__value_))
                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/__tree:2090:36: note: in instantiation of function template specialization 'std::__tree<std::__value_type<Core2::Var<>, Core2::Exp<>>, std::__map_value_compare<Core2::Var<>, std::__value_type<Core2::Var<>, Core2::Exp<>>, std::less<Core2::Var<>>>, std::allocator<std::__value_type<Core2::Var<>, Core2::Exp<>>>>::__find_equal<Core2::Var<>>' requested here
    __node_base_pointer& __child = __find_equal(__parent, __k);
                                   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/map:1598:20: note: in instantiation of function template specialization 'std::__tree<std::__value_type<Core2::Var<>, Core2::Exp<>>, std::__map_value_compare<Core2::Var<>, std::__value_type<Core2::Var<>, Core2::Exp<>>, std::less<Core2::Var<>>>, std::allocator<std::__value_type<Core2::Var<>, Core2::Exp<>>>>::__emplace_unique_key_args<Core2::Var<>, const std::piecewise_construct_t &, std::tuple<const Core2::Var<> &>, std::tuple<>>' requested here
    return __tree_.__emplace_unique_key_args(__k,
                   ^
../src/computation/module.cc:2031:17: note: in instantiation of member function 'std::map<Core2::Var<>, Core2::Exp<>>::operator[]' requested here
            code[x] = rhs;
                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/__iterator/reverse_iterator.h:286:1: note: candidate template ignored: could not match 'reverse_iterator' against 'basic_string'
operator<=>(const reverse_iterator<_Iter1>& __x, const reverse_iterator<_Iter2>& __y)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/__iterator/reverse_iterator.h:286:1: note: candidate template ignored: could not match 'reverse_iterator' against 'basic_string'
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/__utility/pair.h:340:1: note: candidate template ignored: could not match 'pair' against 'basic_string'
operator<=>(const pair<_T1,_T2>& __x, const pair<_T1,_T2>& __y)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/tuple:1544:1: note: candidate template ignored: could not match 'tuple' against 'basic_string'
operator<=>(const tuple<_Tp...>& __x, const tuple<_Up...>& __y)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/tuple:1544:1: note: candidate template ignored: could not match 'tuple' against 'basic_string'
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/__iterator/move_iterator.h:273:6: note: candidate template ignored: could not match 'move_iterator' against 'basic_string'
auto operator<=>(const move_iterator<_Iter1>& __x, const move_iterator<_Iter2>& __y)
     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk/usr/include/c++/v1/__iterator/move_iterator.h:273:6: note: candidate template ignored: could not match
flags = %w[-C build install]
system "meson", "build", "--prefix=#{prefix}", "--buildtype=release", "-Db_ndebug=true"
system "ninja", *flags
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