rename include and exclude lists nomenclature in wdls #29
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR partially addresses #21 by renaming blacklist and whitelist files to "include list" and "exclude list", or similar variants, in our WDL files and corresponding input names in JSON files. I've tried to keep the new names consistent with their old usage in individual task and workflows.
This PR does not address the fact that some of our resource files have names that refer to black / white lists, and that some commands in svtk and the associated scripts have named parameters that use black / white nomenclature.