Register serializer for SimpleAllele for Funcotator.

broadinstitute · Jun 6, 2022 · b89425a · b89425a
1 parent e3d541a
commit b89425a
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/src/main/java/org/broadinstitute/hellbender/engine/spark/GATKRegistrator.java b/src/main/java/org/broadinstitute/hellbender/engine/spark/GATKRegistrator.java
@@ -9,6 +9,7 @@
 import de.javakaffee.kryoserializers.guava.ImmutableMapSerializer;
 import htsjdk.samtools.*;
 import htsjdk.variant.variantcontext.Allele;
+import htsjdk.variant.variantcontext.SimpleAllele;
 import htsjdk.variant.vcf.VCFHeaderLineType;
 import htsjdk.variant.vcf.VCFInfoHeaderLine;
 import org.apache.spark.serializer.KryoRegistrator;
@@ -68,13 +69,13 @@ public VCFInfoHeaderLine newInstance() {
                 return new VCFInfoHeaderLine("TMP", 2, VCFHeaderLineType.String, "");
             }
         });
-        registration = kryo.register(Allele.class);
+        registration = kryo.register(SimpleAllele.class);
         registration.setInstantiator(new ObjectInstantiator<Allele>() {
             public Allele newInstance() {
                 return Allele.create("TCGA");
             }
         });
-    }
+   }
 
     @Override
     public void registerClasses(Kryo kryo) {