Code

fix no data hom refs#8715

Code

Merged

ldgauthier merged 8 commits intomasterbroadinstitute/gatk:masterfrom ldg_fix_no_data_hom_refsbroadinstitute/gatk:ldg_fix_no_data_hom_refsCopy head branch name to clipboardMar 7, 2024

+555-3,392

Commits

Commits on Mar 5, 2024

• Possible fix for no-call issue

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  e48051c

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• Add test with one sample variant, one sample empty

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  b8a7059

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• Fix InbreedingCoeff issue, but AN is wrong

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  7accbf9

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• Passing GQ fix seems to work; still need Gnarly test

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  771d38f

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• New Gnarly test shows good no-call behavior on GVCF with no read data

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  48647a7

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Commits on Mar 6, 2024

• Missed a CombineGVCFs test

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  eb35245

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• Add test for reblocked GVCF representing no reads

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  6c691ee

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Commits on Mar 7, 2024

• Address review comments

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  fec031b

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