Skip to content
New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

added alternative name for SNP column #267

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

LisaSikkema
Copy link

I'm working with GWAS summary statistics where the SNP column is called "variant_id", so added that to the dictionary.

I'm working with GWAS summary statistics where the SNP column is called "variant_id", so added that to the dictionary.
@LisaSikkema
Copy link
Author

hmm this is actually not ideal, because I just encountered another sum stats file that has both variant_id and rs_id as columns, and in this case variant_id is not the one we want. Not sure if you guys want to account for all of this in the script.

# for free to join this conversation on GitHub. Already have an account? # to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant