Update Dockerfile

buschlab · Nov 11, 2024 · 5c79026 · 5c79026
1 parent 3fd755e
commit 5c79026
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/services/cbioportal/Dockerfile b/services/cbioportal/Dockerfile
@@ -31,8 +31,8 @@ RUN sed -i 's/safeStringTest( mutation.getMutationStatus(), "LOH" )/false/' core
 
 # Show all CNVs
 RUN sed -i 's/(-2, 2)/(-2, -1, 1, 2)/' /cbioportal/src/main/java/org/cbioportal/web/parameter/DiscreteCopyNumberEventType.java
-RUN sed -i 's/\!alterationTypes.contains(-1) && \!alterationTypes.contains(0) && \!alterationTypes.contains(1)/!alterationTypes.contains(0)/' src/main/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImpl.java
-RUN sed -i 's/\!alterationTypes.contains(CNA.HETLOSS) && \!alterationTypes.contains(CNA.DIPLOID) && \!alterationTypes.contains(CNA.GAIN)/!alterationTypes.contains(CNA.DIPLOID)/' src/main/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImpl.java
+RUN sed -i 's/\!alterationTypes.contains(-1) && \!alterationTypes.contains(0) && \!alterationTypes.contains(1)/!alterationTypes.contains(0)/' /cbioportal/src/main/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImpl.java
+RUN sed -i 's/\!alterationTypes.contains(CNA.HETLOSS) && \!alterationTypes.contains(CNA.DIPLOID) && \!alterationTypes.contains(CNA.GAIN)/!alterationTypes.contains(CNA.DIPLOID)/' /cbioportal/src/main/java/org/cbioportal/service/impl/DiscreteCopyNumberServiceImpl.java
 
 RUN mvn -DskipTests -Dfrontend.version=0.3.0 -Dfrontend.groupId=com.github.cbioportal clean install package
 RUN mkdir -p target/dependency && (cd target/dependency; jar -xf ../*-exec.jar)