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@calacademy-research

California Academy of Sciences, Institute for Biodiversity Science & Sustainability

Public repositories for IBSS projects

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  1. minibar minibar Public

    Dual barcode and primer demultiplexing for MinION sequenced reads

    Python 39 5

  2. antcat antcat Public

    World Catalog of Ants

    Ruby 19 9

  3. RAxML_Astral_trees RAxML_Astral_trees Public

    This project generates Astral-III species trees from gene trees generated from RAxML using UCE data generated by the Phyluce pipeline. Then runs an Astral III analysis.

    Shell 8 2

  4. BLATq BLATq Public

    blatq is a modified version of BLAT—The BLAST-Like Alignment Tool to allow direct use of fastq files

    C 4 1

  5. antweb antweb Public

    AntWeb is the world's largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribution from anyone with specimen records…

    Java 4

  6. COMB COMB Public

    C O M B

    R 4 4

Repositories

Showing 10 of 52 repositories
  • web-asset-importer Public

    Image client used in conjunction with web-asset-server to process images/data into image server, and specify databases.

    calacademy-research/web-asset-importer’s past year of commit activity
    Python 1 0 0 0 Updated Jan 30, 2025
  • cas-web-asset-server Public Forked from specify/web-asset-server

    Sample attachment server implementation for Specify.

    calacademy-research/cas-web-asset-server’s past year of commit activity
    Python 2 15 0 0 Updated Jan 30, 2025
  • expedition-clustering Public
    calacademy-research/expedition-clustering’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 27, 2025
  • antcat Public

    World Catalog of Ants

    calacademy-research/antcat’s past year of commit activity
    Ruby 19 9 0 3 Updated Jan 24, 2025
  • antweb Public

    AntWeb is the world's largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribution from anyone with specimen records, natural history comments, or images.

    calacademy-research/antweb’s past year of commit activity
    Java 4 0 0 6 Updated Jan 17, 2025
  • picturae_csv_parser Public

    stand alone program , used to QC csvs ready for specify import from picturae, nfn and digileap supplied data

    calacademy-research/picturae_csv_parser’s past year of commit activity
    Python 1 0 0 0 Updated Jan 15, 2025
  • assembly_etc Public
    calacademy-research/assembly_etc’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Jan 7, 2025
  • COMB Public

    C O M B

    calacademy-research/COMB’s past year of commit activity
    R 4 Apache-2.0 4 18 1 Updated Dec 20, 2024
  • load_analyzer Public
    calacademy-research/load_analyzer’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Dec 13, 2024
  • webportal-installer-FLMNH Public Forked from FLMNH/webportal-installer

    The Specify Web Portal

    calacademy-research/webportal-installer-FLMNH’s past year of commit activity
    JavaScript 0 GPL-2.0 12 0 0 Updated Dec 12, 2024
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