Merge pull request #124 from camlab-bioml/dev #72
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| on: | |
| push: | |
| branches: [main, master] | |
| name: shiny-deploy | |
| jobs: | |
| shiny-deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install cURL Headers | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get -y install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libgeos-dev | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| r-version: '4.3.0' | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| - name: Install required install packages and remote repos | |
| run: | | |
| install.packages(c("remotes", "BiocManager")) | |
| remotes::install_version("rsconnect", "0.8.29") | |
| BiocManager::install(version = "3.17") | |
| BiocManager::install(c('BiocGenerics', 'GenomeInfoDbData', 'limma', 'zlibbioc')) | |
| BiocManager::install(ask = F) | |
| shell: Rscript {0} | |
| - name: Authorize and deploy app | |
| env: | |
| APPNAME: cytomarker | |
| SERVER: shinyapps.io | |
| run: | | |
| options(repos=c(BiocManager::repositories(version = "3.17")), rsconnect.packrat = TRUE) | |
| rsconnect::setAccountInfo("${{ secrets.SHINYAPPS_ACC }}", "${{ secrets.SHINYAPPS_TOKEN }}", "${{ secrets.SHINYAPPS_SEC }}") | |
| rsconnect::deployApp(appName = "${{ env.APPNAME }}", account = "${{ secrets.SHINYAPPS_ACC }}", server = "${{ env.SERVER }}") | |
| shell: Rscript {0} |