-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
14 changed files
with
354 additions
and
399 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,216 @@ | ||
| import os | ||
| import numpy as np | ||
| from shutil import copyfile | ||
| import time | ||
|
|
||
| def get_input_frame(outdir,runname): | ||
| infile = outdir + runname + '/frame.in' | ||
|
|
||
| with open(infile) as f: | ||
| lines = [line for line in f] | ||
|
|
||
| ztot = float(lines[1].split()[0]) | ||
| nz = int(lines[2].split()[0]) | ||
| ttot = float(lines[3].split()[0]) | ||
| temp = float(lines[4].split()[0]) | ||
| fdust = float(lines[5].split()[0]) | ||
| fdust2 = float(lines[6].split()[0]) | ||
| taudust = float(lines[7].split()[0]) | ||
| omrain = float(lines[8].split()[0]) | ||
| zom = float(lines[9].split()[0]) | ||
| poro = float(lines[10].split()[0]) | ||
| moistsrf = float(lines[11].split()[0]) | ||
| zwater = float(lines[12].split()[0]) | ||
| zdust = float(lines[13].split()[0]) | ||
| w = float(lines[14].split()[0]) | ||
| q = float(lines[15].split()[0]) | ||
| p = float(lines[16].split()[0]) | ||
| nstep = int(lines[17].split()[0]) | ||
| rstrt = (lines[18].split()[0]) | ||
| runid = (lines[20].split()[0]) | ||
|
|
||
| return ztot,nz,ttot,temp,fdust,fdust2,taudust,omrain,zom,poro,moistsrf,zwater,zdust,w,q,p,nstep,rstrt,runid | ||
|
|
||
| def get_input_switches(outdir,runname): | ||
| infile = outdir + runname + '/switches.in' | ||
|
|
||
| with open(infile) as f: | ||
| lines = [line for line in f] | ||
|
|
||
| w_scheme = int(lines[1].split()[0]) | ||
| mix_scheme = int(lines[2].split()[0]) | ||
| poro_iter = (lines[3].split()[0]) | ||
| sldmin_lim = (lines[4].split()[0]) | ||
| display = (lines[5].split()[0]) | ||
| disp_lim = (lines[6].split()[0]) | ||
| restart = (lines[7].split()[0]) | ||
| rough = (lines[8].split()[0]) | ||
| act_ON = (lines[9].split()[0]) | ||
| dt_fix = (lines[10].split()[0]) | ||
| cec_on = (lines[11].split()[0]) | ||
| dz_fix = (lines[12].split()[0]) | ||
| close_aq = (lines[13].split()[0]) | ||
| poro_evol = (lines[14].split()[0]) | ||
| sa_evol_1 = (lines[15].split()[0]) | ||
| sa_evol_2 = (lines[16].split()[0]) | ||
| psd_bulk = (lines[17].split()[0]) | ||
| psd_full = (lines[18].split()[0]) | ||
| season = (lines[19].split()[0]) | ||
|
|
||
| return w_scheme,mix_scheme,poro_iter,sldmin_lim,display,disp_lim,restart,rough,act_ON,dt_fix \ | ||
| ,cec_on,dz_fix,close_aq,poro_evol,sa_evol_1,sa_evol_2,psd_bulk,psd_full,season | ||
|
|
||
| def get_input_tracers(outdir,runname): | ||
|
|
||
| sld_list = np.genfromtxt(outdir + runname + '/slds.in',dtype='str',skip_header=1) | ||
| aq_list = np.genfromtxt(outdir + runname + '/solutes.in',dtype='str',skip_header=1) | ||
| gas_list = np.genfromtxt(outdir + runname + '/gases.in',dtype='str',skip_header=1) | ||
| exrxn_list = np.genfromtxt(outdir + runname + '/extrxns.in',dtype='str',skip_header=1) | ||
|
|
||
| try: | ||
| sld_list = list(sld_list) | ||
| except: | ||
| sld_list = [str(sld_list)] | ||
| try: | ||
| aq_list = list(aq_list) | ||
| except: | ||
| aq_list = [aq_list[0]] | ||
| try: | ||
| gas_list = list(gas_list) | ||
| except: | ||
| print(gas_list.shape) | ||
| gas_list = [str(gas_list)] | ||
| try: | ||
| exrxn_list = list(exrxn_list) | ||
| except: | ||
| exrxn_list = [exrxn_list[0]] | ||
|
|
||
| return sld_list,aq_list,gas_list,exrxn_list | ||
|
|
||
| def get_input_tracer_bounds(**kwargs): | ||
| outdir = kwargs.get('outdir', '../scepter_output/') | ||
| runname = kwargs.get('runname', 'test_input') | ||
| pr_list = kwargs.get('pr_list', []) | ||
| rain_list = kwargs.get('rain_list', []) | ||
| atm_list = kwargs.get('atm_list', [('pco2',3.16e-4),('po2',0.21),('pnh3',1e-50),('pn2o',1e-50)]) | ||
|
|
||
| notes = [ | ||
| '** parent rock wt fraction (e.g., "ab 0.2" in one line and "ka 0.001" in the next) (if not specified assumed 1e-20)' | ||
| ,'** solute concs. of rain in mol/L (if not specified assumed 1e-20)' | ||
| ,'** atmospheric composition in atm (if not specified assumed 1 PAL)' | ||
| ] | ||
|
|
||
| pr_list.insert(0,'') | ||
| rain_list.insert(0,'') | ||
| atm_list.insert(0,'') | ||
|
|
||
| values_lists = [ | ||
| pr_list | ||
| ,rain_list | ||
| ,atm_list | ||
| ] | ||
|
|
||
| filenames = [ | ||
| 'parentrock.in' | ||
| ,'rain.in' | ||
| ,'atm.in' | ||
| ] | ||
|
|
||
| nn = 3 | ||
|
|
||
| if not os.path.exists(outdir + runname): os.makedirs(outdir + runname) | ||
|
|
||
| for k in range(nn): | ||
| values = values_lists[k] | ||
| filename = filenames[k] | ||
| n = len(values) | ||
| input_text = '' | ||
| for i in range(n): | ||
| if i==0: | ||
| input_text += notes[k] + '\n' | ||
| else: | ||
| try: | ||
| input_text += values[i][0] + '\t' + str(values[i][1]) + '\n' | ||
| except: | ||
| print(n,i,values) | ||
| time.sleep(100) | ||
|
|
||
| input_file = outdir + runname + '/' + filename | ||
|
|
||
| with open(input_file, 'w') as file: | ||
| file.write(input_text) | ||
|
|
||
| print(input_text) | ||
|
|
||
|
|
||
| del pr_list[0] | ||
| del rain_list[0] | ||
| del atm_list[0] | ||
|
|
||
| def get_input_sld_properties(outdir,runname,filename): | ||
|
|
||
|
|
||
| infile = outdir + runname + '/' + filename | ||
|
|
||
| sld_data_list = [] | ||
|
|
||
|
|
||
| with open(infile) as f: | ||
| cnt2 = 0 | ||
| for line in f: | ||
| if cnt2 ==0: | ||
| cnt2 += 1 | ||
| continue | ||
| else: | ||
| cnt2 += 1 | ||
| a = line.split() | ||
| tmplist = [] | ||
| cnt = 0 | ||
| for item in a: | ||
| if cnt ==0: tmplist.append(item) | ||
| else: tmplist.append(float(item)) | ||
| cnt += 1 | ||
|
|
||
| sld_data_list.append(tmplist) | ||
|
|
||
| return sld_data_list | ||
|
|
||
| def main(): | ||
|
|
||
| outdir = '../scepter_output/' | ||
| # runname = 'US_cropland_311_sph_N_spintuneup_field' | ||
| runname = 'test_Pot7' | ||
|
|
||
| ztot,nz,ttot,temp,fdust,fdust2,taudust,omrain,zom,poro,moistsrf,zwater,zdust,w,q,p,nstep,rstrt,runid = get_input_frame(outdir,runname) | ||
| print( | ||
| ztot,nz,ttot,temp,fdust,fdust2,taudust,omrain,zom,poro,moistsrf,zwater,zdust,w,q,p,nstep,rstrt,runid | ||
| ) | ||
|
|
||
| w_scheme,mix_scheme,poro_iter,sldmin_lim,display,disp_lim,restart,rough,act_ON,dt_fix \ | ||
| ,cec_on,dz_fix,close_aq,poro_evol,sa_evol_1,sa_evol_2,psd_bulk,psd_full,season = get_input_switches(outdir,runname) | ||
| print( | ||
| w_scheme,mix_scheme,poro_iter,sldmin_lim,display,disp_lim,restart,rough,act_ON,dt_fix | ||
| ,cec_on,dz_fix,close_aq,poro_evol,sa_evol_1,sa_evol_2,psd_bulk,psd_full,season | ||
| ) | ||
|
|
||
| sld_list,aq_list,gas_list,exrxn_list = get_input_tracers(outdir,runname) | ||
| print( | ||
| sld_list,aq_list,gas_list,exrxn_list | ||
| ) | ||
|
|
||
| filename = 'cec.in' | ||
| sld_data_list = get_input_sld_properties(outdir,runname,filename) | ||
| print( | ||
| sld_data_list, | ||
| sld_data_list[0][1] | ||
| ) | ||
|
|
||
| sld_data_list = get_input_sld_properties('./','data','dust_gbasalt.in') | ||
| print( | ||
| sld_data_list | ||
| ) | ||
|
|
||
| if __name__ == '__main__': | ||
| main() | ||
|
|
||
|
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.