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added missing menu entries
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haesleinhuepf committed Apr 23, 2020
1 parent 45e2ba6 commit 6785cf2
Showing 1 changed file with 35 additions and 20 deletions.
55 changes: 35 additions & 20 deletions src/main/resources/plugins.config
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Expand Up @@ -21,6 +21,7 @@ Plugins>ImageJ on GPU (CLIJ2)>Binary, "Closing using box neighborh
Plugins>ImageJ on GPU (CLIJ2)>Binary, "Closing using diamond neighborhood on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ClosingDiamond
Plugins>ImageJ on GPU (CLIJ2)>Binary, "Fill Holes on GPU (experimental)", net.haesleinhuepf.clij2.plugins.BinaryFillHoles
Plugins>ImageJ on GPU (CLIJ2)>Binary, "Voronoi (Octagon) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.VoronoiOctagon
Plugins>ImageJ on GPU (CLIJ2)>Binary, "Label Voronoi (Octagon) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.LabelVoronoiOctagon
Plugins>ImageJ on GPU (CLIJ2)>Binary, "-", null
Plugins>ImageJ on GPU (CLIJ2)>Binary, "Mask image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.Mask
Plugins>ImageJ on GPU (CLIJ2)>Binary, "Mask an 3D image with a 2D mask on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaskStackWithPlane
Expand Down Expand Up @@ -116,6 +117,7 @@ Plugins>ImageJ on GPU (CLIJ2)>Filter, "Replace a specific intensit
Plugins>ImageJ on GPU (CLIJ2)>Filter, "Replace a list of intensities in an image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ReplaceIntensities

Plugins>ImageJ on GPU (CLIJ2)>Filter>Neighbors, "Mean value of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MeanOfTouchingNeighbors
Plugins>ImageJ on GPU (CLIJ2)>Filter>Neighbors, "Median value of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MedianOfTouchingNeighbors
Plugins>ImageJ on GPU (CLIJ2)>Filter>Neighbors, "Minimum value of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumOfTouchingNeighbors
Plugins>ImageJ on GPU (CLIJ2)>Filter>Neighbors, "Maximum value of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumOfTouchingNeighbors

Expand Down Expand Up @@ -205,17 +207,25 @@ Plugins>ImageJ on GPU (CLIJ2)>Measure, "Get size of image on GPU (e
Plugins>ImageJ on GPU (CLIJ2)>Measure, "Count non-zero pixels on GPU (experimental)", net.haesleinhuepf.clij2.plugins.CountNonZeroPixels
Plugins>ImageJ on GPU (CLIJ2)>Measure, "Statistics of label map excluding background on GPU (experimental)", net.haesleinhuepf.clij2.plugins.StatisticsOfLabelledPixels
Plugins>ImageJ on GPU (CLIJ2)>Measure, "Statistics of label map including background on GPU (experimental)", net.haesleinhuepf.clij2.plugins.StatisticsOfBackgroundAndLabelledPixels
Plugins>ImageJ on GPU (CLIJ2)>Measure, "Statistics whole image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.StatisticsOfImage
Plugins>ImageJ on GPU (CLIJ2)>Measure, "Sum all slices of an image stack on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumImageSliceBySlice

Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Average distance of n closest points from a distance matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.AverageDistanceOfNClosestPoints
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Average distance of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.AverageDistanceOfTouchingNeighbors
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Determine shortest distances from a distance matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ShortestDistances
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Count touching neighbors from touch matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.CountTouchingNeighbors
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Generate distance matrix from position lists on GPU (experimental)", net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Generate distance matrix from pointlists on GPU (experimental)", net.haesleinhuepf.clij2.plugins.GenerateDistanceMatrix
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Generate touch matrix from label map on GPU (experimental)", net.haesleinhuepf.clij2.plugins.GenerateTouchMatrix
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Determine n shortest distances from a distance matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.NClosestPoints
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Determine n shortest points from a distance matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.NClosestPoints
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Determine n shortest distances from a distance matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.NClosestDistances

Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Generate mesh from touch matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.TouchMatrixToMesh
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Determine minimum distance of touching neighbors on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumDistanceOfTouchingNeighbors

Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Convert touch matrix to adjacency matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.TouchMatrixToAdjacencyMatrix
Plugins>ImageJ on GPU (CLIJ2)>Measure>Mesh, "Convert adjacency matrix to touch matrix on GPU (experimental)", net.haesleinhuepf.clij2.plugins.AdjacencyMatrixToTouchMatrix


Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "CLIJ2 ClInfo ", net.haesleinhuepf.clij2.plugins.ClInfo
Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "CLIJ Debug on/off ", net.haesleinhuepf.clij.utilities.DebugToggle
Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "Clear GPU memory ", net.haesleinhuepf.clij2.plugins.Clear
Expand All @@ -227,7 +237,9 @@ Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "List GPU properies (Experim
Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "List available GPUs (Experimental) ", net.haesleinhuepf.clij2.plugins.ListAvailableGPUs
Plugins>ImageJ on GPU (CLIJ2)>Macro tools, "Invalidate kernel cache (Experimental) ", net.haesleinhuepf.clij2.plugins.InvalidateKernelCache

Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Connected components analysis/labeling on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabeling

Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Connected components analysis/labeling (box) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingBox
Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Connected components analysis/labeling (diamond) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ConnectedComponentsLabelingDiamond
Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Mask a label in an image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaskLabel

Plugins>ImageJ on GPU (CLIJ2)>Labeling, "-", null
Expand All @@ -244,11 +256,12 @@ Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Detect label edges on GPU (
Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Label spots on GPU (experimental)", net.haesleinhuepf.clij2.plugins.LabelSpots
Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Label to mask on GPU (experimental)", net.haesleinhuepf.clij2.plugins.LabelToMask
Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Labelled spots to pointlist on GPU (experimental)", net.haesleinhuepf.clij2.plugins.LabelledSpotsToPointList
Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Spots image to position list on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SpotsToPointList
Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Spots image to pointlist on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SpotsToPointList
Plugins>ImageJ on GPU (CLIJ2)>Labeling, "Pointlist to label spots image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.PointlistToLabelledSpots

Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert 2D image to a table on GPU (experimental)", net.haesleinhuepf.clij2.plugins.Image2DToResultsTable
Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert a table to a 2D image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ResultsTableToImage2D
Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert a table column to an image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ResultsTableColumnToImage
Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert 2D image to a table on GPU (experimental)", net.haesleinhuepf.clij2.plugins.PullToResultsTable
Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert a table to a 2D image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.PushResultsTable
Plugins>ImageJ on GPU (CLIJ2)>Table, "Convert a table column to an image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.PushResultsTableColumn

Plugins>ImageJ on GPU (CLIJ2)>Threshold, "Automatic threshold on GPU (experimental)", net.haesleinhuepf.clij2.plugins.AutomaticThreshold
Plugins>ImageJ on GPU (CLIJ2)>Threshold, "Apply a threshold on GPU (experimental)", net.haesleinhuepf.clij2.plugins.Threshold
Expand Down Expand Up @@ -313,30 +326,32 @@ Plugins>ImageJ on GPU (CLIJ2)>Transform, "Transpose in XZ on GPU
Plugins>ImageJ on GPU (CLIJ2)>Transform, "Transpose in YZ on GPU (experimental)", net.haesleinhuepf.clij2.plugins.TransposeYZ
Plugins>ImageJ on GPU (CLIJ2)>Transform, "Resample image on GPU (experimental)", net.haesleinhuepf.clij2.plugins.Resample
Plugins>ImageJ on GPU (CLIJ2)>Transform, "Image to stack on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ImageToStack


Plugins>ImageJ on GPU (CLIJ2)>Transform, "Concatenate two image stacks on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ConcatenateStacks


Plugins>ImageJ on GPU (CLIJ2)>Projections, "Minimum-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumZProjection
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Maximum-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumZProjection
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Mean-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MeanZProjection
Plugins>ImageJ on GPU (CLIJ2)>Projection, "Median-Z-Projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MedianZProjection
Plugins>ImageJ on GPU (CLIJ2)>Projection, "Standard-Deviation-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Median-Z-Projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MedianZProjection
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Standard-Deviation-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.StandardDeviationZProjection
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Sum-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumZProjection
Plugins>ImageJ on GPU (CLIJ2)>Projections, "-", null
Plugins>ImageJ on GPU (CLIJ2)>Projections, "ArgMaximum-Z-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.ArgMaximumZProjection
Plugins>ImageJ on GPU (CLIJ2)>Projection, "Maximum-X-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumXProjection
Plugins>ImageJ on GPU (CLIJ2)>Projection, "Maximum-Y-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumYProjection
Plugins>ImageJ on GPU (CLIJ2)>Projection, "Maximum-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
Plugins>ImageJ on GPU (CLIJ2)>Projection, "Minimum-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
Plugins>ImageJ on GPU (CLIJ2)>Projection, "Maximum-Z-projection (threshold/bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
Plugins>ImageJ on GPU (CLIJ2)>Projection, "Mean-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
Plugins>ImageJ on GPU (CLIJ2)>Projection, "Sum-X-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumXProjection
Plugins>ImageJ on GPU (CLIJ2)>Projection, "Sum-Y-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumYProjection
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Maximum-X-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumXProjection
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Maximum-Y-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumYProjection
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Maximum-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MaximumZProjectionBounded
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Minimum-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumZProjectionBounded
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Maximum-Z-projection (threshold/bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MinimumZProjectionThresholdedBounded
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Mean-Z-projection (bounded) on GPU (experimental)", net.haesleinhuepf.clij2.plugins.MeanZProjectionBounded
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Sum-X-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumXProjection
Plugins>ImageJ on GPU (CLIJ2)>Projections, "Sum-Y-projection on GPU (experimental)", net.haesleinhuepf.clij2.plugins.SumYProjection



Plugins>ImageJ on GPU (CLIJ2), "CLIJ2 Version 0.27.2 (alpha release)", null



Plugins>ImageJ on GPU (CLIJ2), "CLIJ2 Version 0.27.0 (alpha release)", null



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