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Request: Please create version with make USE_OPENMP=1 #79

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jolespin opened this issue Jul 29, 2019 · 4 comments
Closed

Request: Please create version with make USE_OPENMP=1 #79

jolespin opened this issue Jul 29, 2019 · 4 comments

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@jolespin
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Is there a way to fix this via conda installation? I can't seem to get this to work.

Essnentially, I'm asking if there is a precompiled version I can install via conda that has USE_OPENMP=1?

I've posted a question on StackOverflow but I haven't gotten any bites:
https://stackoverflow.com/questions/57257712/how-to-fix-openblas-warning-detect-openmp-loop-and-this-application-may-hang

If I do a separate install via this post I fear that my conda environment will break.

These GitHub issues might help:
BinPro/CONCOCT#232
bxlab/metaWRAP#168

@isuruf isuruf transferred this issue from conda-forge/blas-feedstock Jul 29, 2019
@isuruf
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isuruf commented Jul 18, 2020

Done. conda install libopenblas=*=*openmp*

@LucasMS
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LucasMS commented Apr 22, 2021

For those who landed here and can not find the package during installation, try:

conda install libopenblas=*=*openmp* --channel conda-forge

@Zepeng-Mu
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Hi, I got this error: zsh: no matches found: libopenblas=*=*openmp*.
Am I supposed to replace teh * with something else?

Thanks!

@jakirkham
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@Zepeng-Mu would place single quotes (') around it. The shell is trying to interpret the * before they are passed to conda, which we don't want it to do. Placing it in single quotes will keep the shell from touching it.

jfy133 added a commit to jfy133/bioconda-recipes that referenced this issue Jun 20, 2024
martin-g added a commit to martin-g/bioconda-recipes that referenced this issue Jun 21, 2024
Suggested at conda-forge/openblas-feedstock#79 (comment)

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
martin-g added a commit to bioconda/bioconda-recipes that referenced this issue Jun 21, 2024
* concoct: pin scikit-learn to 1.1.3

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Try to fix the linux-aarch64 build by pinning Python to >=3.8,<=3.10

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* concoct: Patch concoct/transform.py perform_pca() to work with newer scikit-learn than 1.1.3

Suggested-by: @jlanga at #48553 (comment)

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Add libopenblas+openmp as a runtime dependency

Suggested at conda-forge/openblas-feedstock#79 (comment)

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

---------

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
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