Update repo config

[yambottle]

• Default Tools
  • pre-commit docs - done, Dev 861 pre commit #1212
    • black
    • flake8
    • isort
    • spellcheck
    • pre-commit hook
    • pytest with unit test - pending, IMPR: split unit/integration test #1211
• Repo Security here
  • auto version bump for some files(Github action yaml and later py dependencies) docs - after pre-commit and test/release actions
  • scan vulnerability - already in placed, if there is any, will be shown here
  • secret scan - done
  • private vulnerability report docs - done
  • code security scan/static code analysis docs - not enabled, we use flake
• Branch protection here
  • no direct push to master branch, restrict admin push for datajoint-python - in placed
  • PR checks - we want PR checks but we don’t want to block PR merge
    • lint is required, config in branch protection
  • checks same as pre-commit
  • unit test - split to IMPR: split unit/integration test #1211
• Project management
  • issue/pr labels: https://github.com/datajoint/datajoint-python/labels vs default labels - done
  • auto triage label GHA doc, then it’s easier to filter issues that needs the first round review and then categorized by other labels - DEV-861-auto-label #1209
  • we can link CONTRIBUTION.md - 'how to become a contributor'
    • mention label, label issue/pr, link issues to pr, setup pre-commit
      • github pr merge would auto close linked issue: https://github.com/orgs/community/discussions/23476, if needed create a sub issue instead
    • Create a feature request or improvement request in datajoint-python, then possibly can be included in the datajoint-specs as standard
    • Github Milestones/Project - needs discussion
      • Github Project has different views that can used for roadmap or sprint: https://docs.github.com/en/issues/planning-and-tracking-with-projects/customizing-views-in-your-project/managing-your-views
        • It's quite capable: https://m.youtube.com/watch?v=Is9KZFkHmpk&pp=ygUhdXNlIGdpdGh1YiBwcm9qZWN0IHJlcGxpY2F0ZSBqaXJh
      • need to split datajoint-python from this Project board that mixed with datajoint-elements https://github.com/orgs/datajoint/projects/6, suggest to keep this board for datajoint-elements only, and create a different board for misc projects(doc, tutorial, etc.)
  • close stale issue bot - start with cleaning 1 year inactive issues docs Dev 861 stale issues #1208 , fix: 🐛 fix rate limit and rename #1214
  • README.md badges blog
    • Build status badges that tell you if the project is working as it should
      • datajoint conda-forge badges
      • citation badges
    • Code coverage badges that show how much of the code is tested
    • Version badges that show the latest version of the project
    • License badges that tell you how the project can be used
    • Compatibility badges that show what the project works with
  • Update issue template - DEV-861-auto-label #1209
  • Github Discussion - done, https://github.com/datajoint/datajoint-python/discussions
  • Citations
    • Zenodo
    • BioRxiv
    • example