v1.0.0

datngu · Jul 8, 2022 · 10e319e · 10e319e
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diff --git a/Circall_v0.2.0/.DS_Store → Circall_v1.0.0/.DS_Store b/Circall_v0.2.0/.DS_Store → Circall_v1.0.0/.DS_Store
diff --git a/Circall_v0.2.0/Circall_source.sh → Circall_v1.0.0/Circall_source.sh b/Circall_v0.2.0/Circall_source.sh → Circall_v1.0.0/Circall_source.sh
diff --git a/...l_v0.2.0/Data/Circall_depdata_human.RData → ...l_v1.0.0/Data/Circall_depdata_human.RData b/...l_v0.2.0/Data/Circall_depdata_human.RData → ...l_v1.0.0/Data/Circall_depdata_human.RData
diff --git a/Circall_v0.2.0/Data/test_read1.fasta.gz → Circall_v1.0.0/Data/test_read1.fasta.gz b/Circall_v0.2.0/Data/test_read1.fasta.gz → Circall_v1.0.0/Data/test_read1.fasta.gz
diff --git a/Circall_v0.2.0/Data/test_read2.fasta.gz → Circall_v1.0.0/Data/test_read2.fasta.gz b/Circall_v0.2.0/Data/test_read2.fasta.gz → Circall_v1.0.0/Data/test_read2.fasta.gz
diff --git a/Circall_v0.2.0/R/Circall_functions.R → Circall_v1.0.0/R/Circall_functions.R b/Circall_v0.2.0/R/Circall_functions.R → Circall_v1.0.0/R/Circall_functions.R
diff --git a/Circall_v0.2.0/R/Circall_simulator.R → Circall_v1.0.0/R/Circall_simulator.R b/Circall_v0.2.0/R/Circall_simulator.R → Circall_v1.0.0/R/Circall_simulator.R
diff --git a/Circall_v0.2.0/R/buildBSJdb.R → Circall_v1.0.0/R/buildBSJdb.R b/Circall_v0.2.0/R/buildBSJdb.R → Circall_v1.0.0/R/buildBSJdb.R
diff --git a/Circall_v0.2.0/R/createSqlite.R → Circall_v1.0.0/R/createSqlite.R b/Circall_v0.2.0/R/createSqlite.R → Circall_v1.0.0/R/createSqlite.R
diff --git a/Circall_v0.2.0/R/doPairEndFiltering.R → Circall_v1.0.0/R/doPairEndFiltering.R b/Circall_v0.2.0/R/doPairEndFiltering.R → Circall_v1.0.0/R/doPairEndFiltering.R
diff --git a/Circall_v0.2.0/R/doSingleEndFiltering.R → Circall_v1.0.0/R/doSingleEndFiltering.R b/Circall_v0.2.0/R/doSingleEndFiltering.R → Circall_v1.0.0/R/doSingleEndFiltering.R
diff --git a/Circall_v0.2.0/R/export.R → Circall_v1.0.0/R/export.R b/Circall_v0.2.0/R/export.R → Circall_v1.0.0/R/export.R
diff --git a/Circall_v0.2.0/R/getFdr.R → Circall_v1.0.0/R/getFdr.R b/Circall_v0.2.0/R/getFdr.R → Circall_v1.0.0/R/getFdr.R
diff --git a/Circall_v0.2.0/R/getPseudoCircRNAsequence.R → Circall_v1.0.0/R/getPseudoCircRNAsequence.R b/Circall_v0.2.0/R/getPseudoCircRNAsequence.R → Circall_v1.0.0/R/getPseudoCircRNAsequence.R
diff --git a/Circall_v0.2.0/R/load_packages.R → Circall_v1.0.0/R/load_packages.R b/Circall_v0.2.0/R/load_packages.R → Circall_v1.0.0/R/load_packages.R
diff --git a/Circall_v0.2.0/config.sh → Circall_v1.0.0/config.sh b/Circall_v0.2.0/config.sh → Circall_v1.0.0/config.sh
diff --git a/..._v0.2.0/include/EmpiricalDistribution.hpp → ..._v1.0.0/include/EmpiricalDistribution.hpp b/..._v0.2.0/include/EmpiricalDistribution.hpp → ..._v1.0.0/include/EmpiricalDistribution.hpp
diff --git a/...0.2.0/include/EquivalenceClassBuilder.hpp → ...1.0.0/include/EquivalenceClassBuilder.hpp b/...0.2.0/include/EquivalenceClassBuilder.hpp → ...1.0.0/include/EquivalenceClassBuilder.hpp
diff --git a/Circall_v0.2.0/include/ExportFeq.hpp → Circall_v1.0.0/include/ExportFeq.hpp b/Circall_v0.2.0/include/ExportFeq.hpp → Circall_v1.0.0/include/ExportFeq.hpp
diff --git a/Circall_v0.2.0/include/ReadExperiment.hpp → Circall_v1.0.0/include/ReadExperiment.hpp b/Circall_v0.2.0/include/ReadExperiment.hpp → Circall_v1.0.0/include/ReadExperiment.hpp
diff --git a/...all_v0.2.0/include/SACollectorCircall.hpp → ...all_v1.0.0/include/SACollectorCircall.hpp b/...all_v0.2.0/include/SACollectorCircall.hpp → ...all_v1.0.0/include/SACollectorCircall.hpp
diff --git a/...ll_v0.2.0/include/spdlog/details/format.h → ...ll_v1.0.0/include/spdlog/details/format.h b/...ll_v0.2.0/include/spdlog/details/format.h → ...ll_v1.0.0/include/spdlog/details/format.h
diff --git a/Circall_v0.2.0/install.sh → Circall_v1.0.0/install.sh b/Circall_v0.2.0/install.sh → Circall_v1.0.0/install.sh
diff --git a/Circall_v0.2.0/linux/.DS_Store → Circall_v1.0.0/linux/.DS_Store b/Circall_v0.2.0/linux/.DS_Store → Circall_v1.0.0/linux/.DS_Store
diff --git a/Circall_v0.2.0/linux/bin/Circall_bsj → Circall_v1.0.0/linux/bin/Circall_bsj b/Circall_v0.2.0/linux/bin/Circall_bsj → Circall_v1.0.0/linux/bin/Circall_bsj
diff --git a/Circall_v0.2.0/linux/bin/Circall_pseudo → Circall_v1.0.0/linux/bin/Circall_pseudo b/Circall_v0.2.0/linux/bin/Circall_pseudo → Circall_v1.0.0/linux/bin/Circall_pseudo
diff --git a/Circall_v0.2.0/linux/bin/Circall_wt → Circall_v1.0.0/linux/bin/Circall_wt b/Circall_v0.2.0/linux/bin/Circall_wt → Circall_v1.0.0/linux/bin/Circall_wt
diff --git a/Circall_v0.2.0/linux/bin/TxIndexer → Circall_v1.0.0/linux/bin/TxIndexer b/Circall_v0.2.0/linux/bin/TxIndexer → Circall_v1.0.0/linux/bin/TxIndexer
diff --git a/Circall_v0.2.0/linux/bin/buildBSJdb.R → Circall_v1.0.0/linux/bin/buildBSJdb.R b/Circall_v0.2.0/linux/bin/buildBSJdb.R → Circall_v1.0.0/linux/bin/buildBSJdb.R
diff --git a/Circall_v0.2.0/linux/bin/createSqlite.R → Circall_v1.0.0/linux/bin/createSqlite.R b/Circall_v0.2.0/linux/bin/createSqlite.R → Circall_v1.0.0/linux/bin/createSqlite.R
diff --git a/Circall_v0.2.0/linux/lib/libgcc_s.so.1 → Circall_v1.0.0/linux/lib/libgcc_s.so.1 b/Circall_v0.2.0/linux/lib/libgcc_s.so.1 → Circall_v1.0.0/linux/lib/libgcc_s.so.1
diff --git a/Circall_v0.2.0/linux/lib/libgomp.so.1 → Circall_v1.0.0/linux/lib/libgomp.so.1 b/Circall_v0.2.0/linux/lib/libgomp.so.1 → Circall_v1.0.0/linux/lib/libgomp.so.1
diff --git a/Circall_v0.2.0/linux/lib/libm.so.6 → Circall_v1.0.0/linux/lib/libm.so.6 b/Circall_v0.2.0/linux/lib/libm.so.6 → Circall_v1.0.0/linux/lib/libm.so.6
diff --git a/Circall_v0.2.0/linux/lib/libsailfish_core.a → Circall_v1.0.0/linux/lib/libsailfish_core.a b/Circall_v0.2.0/linux/lib/libsailfish_core.a → Circall_v1.0.0/linux/lib/libsailfish_core.a
diff --git a/Circall_v0.2.0/linux/lib/libtbb.so → Circall_v1.0.0/linux/lib/libtbb.so b/Circall_v0.2.0/linux/lib/libtbb.so → Circall_v1.0.0/linux/lib/libtbb.so
diff --git a/Circall_v0.2.0/linux/lib/libtbb.so.2 → Circall_v1.0.0/linux/lib/libtbb.so.2 b/Circall_v0.2.0/linux/lib/libtbb.so.2 → Circall_v1.0.0/linux/lib/libtbb.so.2
diff --git a/Circall_v0.2.0/linux/lib/libtbbmalloc.so → Circall_v1.0.0/linux/lib/libtbbmalloc.so b/Circall_v0.2.0/linux/lib/libtbbmalloc.so → Circall_v1.0.0/linux/lib/libtbbmalloc.so
diff --git a/Circall_v0.2.0/linux/lib/libtbbmalloc.so.2 → Circall_v1.0.0/linux/lib/libtbbmalloc.so.2 b/Circall_v0.2.0/linux/lib/libtbbmalloc.so.2 → Circall_v1.0.0/linux/lib/libtbbmalloc.so.2
diff --git a/...ll_v0.2.0/linux/lib/libtbbmalloc_proxy.so → ...ll_v1.0.0/linux/lib/libtbbmalloc_proxy.so b/...ll_v0.2.0/linux/lib/libtbbmalloc_proxy.so → ...ll_v1.0.0/linux/lib/libtbbmalloc_proxy.so
diff --git a/..._v0.2.0/linux/lib/libtbbmalloc_proxy.so.2 → ..._v1.0.0/linux/lib/libtbbmalloc_proxy.so.2 b/..._v0.2.0/linux/lib/libtbbmalloc_proxy.so.2 → ..._v1.0.0/linux/lib/libtbbmalloc_proxy.so.2
diff --git a/Circall_v0.2.0/src/CMakeLists.txt → Circall_v1.0.0/src/CMakeLists.txt b/Circall_v0.2.0/src/CMakeLists.txt → Circall_v1.0.0/src/CMakeLists.txt
diff --git a/Circall_v0.2.0/src/Circall_bsj.cpp → Circall_v1.0.0/src/Circall_bsj.cpp b/Circall_v0.2.0/src/Circall_bsj.cpp → Circall_v1.0.0/src/Circall_bsj.cpp
diff --git a/Circall_v0.2.0/src/Circall_pseudo.cpp → Circall_v1.0.0/src/Circall_pseudo.cpp b/Circall_v0.2.0/src/Circall_pseudo.cpp → Circall_v1.0.0/src/Circall_pseudo.cpp
diff --git a/Circall_v0.2.0/src/Circall_wt.cpp → Circall_v1.0.0/src/Circall_wt.cpp b/Circall_v0.2.0/src/Circall_wt.cpp → Circall_v1.0.0/src/Circall_wt.cpp
diff --git a/Circall_v0.2.0/src/EmpiricalDistribution.cpp → Circall_v1.0.0/src/EmpiricalDistribution.cpp b/Circall_v0.2.0/src/EmpiricalDistribution.cpp → Circall_v1.0.0/src/EmpiricalDistribution.cpp
diff --git a/Circall_v0.2.0/src/ExportFeq.cpp → Circall_v1.0.0/src/ExportFeq.cpp b/Circall_v0.2.0/src/ExportFeq.cpp → Circall_v1.0.0/src/ExportFeq.cpp
diff --git a/Circall_v0.2.0/src/TxIndexer.cpp → Circall_v1.0.0/src/TxIndexer.cpp b/Circall_v0.2.0/src/TxIndexer.cpp → Circall_v1.0.0/src/TxIndexer.cpp
diff --git a/Dockerfile b/Dockerfile
@@ -6,7 +6,7 @@ LABEL authors="Dat T Nguyen" \
 
 
 ADD environment.yml /
-ADD Circall_v0.2.0 /Circall
+ADD Circall_v1.0.0 /Circall
 
 
 RUN conda install mamba -n base -c conda-forge -y