Bump networkx from 3.2.1 to 3.4.2 #723
Workflow file for this run
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: R-MacOS | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: macos-latest | |
| strategy: | |
| matrix: | |
| r-version: ['4.4.0', '4.3.2'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Update Homebrew | |
| run: | | |
| brew update | |
| - name: Install pandoc | |
| run: | | |
| for i in {1..3}; do | |
| brew install pandoc && break || sleep 15 | |
| done | |
| - name: Install gfortran and configure Makevars | |
| run: | | |
| brew install gcc | |
| mkdir -p ~/.R | |
| touch ~/.R/Makevars | |
| echo "FC=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars | |
| echo "F77=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars | |
| echo "FLIBS=-L$(brew --prefix)/lib/gcc/current -lgfortran -lquadmath -lm" >> ~/.R/Makevars | |
| echo "LDFLAGS=-L$(brew --prefix)/lib/gcc/current" >> ~/.R/Makevars | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| - name: Install R dependencies | |
| run: | | |
| Rscript -e "install.packages(c('remotes', 'rcmdcheck', 'reticulate', 'renv', 'knitr', 'rmarkdown', 'lsa', 'purrr', 'testthat', 'htmltools'), repos='https://cran.r-project.org')" | |
| Rscript -e "if (getRversion() >= '4.4.0') remotes::install_version('Matrix', version = '1.5.3') else install.packages('Matrix', type = 'binary')" | |
| Rscript -e "remotes::install_version('htmltools', version = '0.5.8')" | |
| Rscript -e "renv::restore()" | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.10.x' | |
| - name: Install Python virtualenv | |
| run: pip install virtualenv | |
| - name: Create Python virtual environment | |
| run: virtualenv flair_env | |
| - name: Install Python dependencies in virtual environment | |
| run: | | |
| source flair_env/bin/activate | |
| pip install --upgrade pip | |
| pip install scipy==1.12.0 | |
| pip install flair | |
| - name: Remove Python cache files | |
| run: find . -name '*.pyc' -delete | |
| - name: Check (with virtual environment) | |
| run: | | |
| source flair_env/bin/activate | |
| R CMD build --no-build-vignettes . | |
| shell: bash |