BioHDT

#biohdt on Slack.

https://www.youtube.com/watch?v=HMPkc725sMY

Objectives

• Improve the quality, usability, and performance of tooling for creating HDT files.
• Remove blockers for Bio2RDF, EBI RDF, PubChemRDF, etc. dataset conversions into HDT.

Tasks

If you want to work on a task, please add your name next to it here to avoid duplication of effort:

• HDT for C++
  • Fix blocking issues (Arto, Gang)
    • #6
    • #12
  • Improve performance and scalability (Arto):
    • https://groups.google.com/d/msg/biohdt/pK8dlTjvBkk/eGJ9SgOICAAJ
    • https://groups.google.com/d/msg/biohdt/Vx1X8Y_CBhw/eGMc6erWCAAJ
  • Begin cleaning up the code base for C++11 compatibility (Arto)
• HDT for Java
  • Fix open issues:
    • #3: Add support for named graphs
    • #4: Add support for more RDF formats in Fuseki (Motoshige)
    • #8: Build error with Jena 3 due to use of removed RiotReader class (Motoshige)
    • #9: Support for default graph as the union of all named graphs
    • #10: Fix missing libraries when building with Fuseki 2.3.1 (Gang, Moto)
• HDT for Elixir
  • Break ground (Raoul, Arto)

Mailing List

• https://groups.google.com/forum/#!forum/biohdt
• https://groups.google.com/d/msg/biohdt/DzFkSfj-0CY/1Rx7pZ2VKwAJ

References

• http://www.rdfhdt.org/
  • http://www.rdfhdt.org/hdt-internals/
• https://github.com/rdfhdt

Participants

• Arto Bendiken (@arto on Slack)
  • Working on fixing issues in the HDT C++ implementation.
  • Working on the Elixir implementation.
• Alexander Garcia (@alexgarciac on Slack)
• Evan Bolton (@bolton on Slack)
• Michel Dumontier (@michel on Slack)
• Raoul Bonnal (@helios on Slack)
  • Working on the HDT Elixir implementation.
• Simon Jupp (@simonjupp on Slack)
• Toshiaki Katayama
• Atsuko Yamaguchi (@atsuko on Slack)
• Issaku Yamada (@issaku on Slack)
• Nobu Aoki (@aokinobu on Slack)
• Akira Kinjo (@akinjo on Slack)
• Motoshige Takagi (@moto on Slack)
  • Working on fixing issues in the HDT Java implementation.
• Gang Fu (remotely)
  • Working on fixing issues in the HDT C++ implementation.