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Welcome to deepTools GitHub repository! Before opening the issue please check
that the following requirements are met :
Search whether this issue (or a similar issue) has been solved before
using the search tab above. Link the previous issue if appropriate below. https://www.biostars.org/p/9582427/#9598279
Paste your deepTools version (deeptools --version) and your python
version (python --version) below.
deeptools 3.5.5
Python 3.10.12
Paste the full deepTools command that produces the issue below
(ignore if you simply spotted the issue in the code/documentation). alignmentSieve -p ${THREADS} --shift 4 -5 --blackListFileName ${BLACKLIST} -b ${BOWTIE2}.clean.bam -o ${BOWTIE2}.shift.tmp
Paste the output printed on screen from the command that produces the issue
below (ignore if you simply spotted the issue in the code/documentation).
no error. but the ${BOWTIE2}.shift.tmp haven't reads infomation
my input data is single-end data. when i use alignmentSieve -p ${THREADS} --ATACshift --blackListFileName ${BLACKLIST} -b ${BOWTIE2}.clean.bam -o ${BOWTIE2}.shift.tmp
i can get right result. Is it possible for alignmentSieve to support single-ended data?
If not, what should I do?
The text was updated successfully, but these errors were encountered:
Welcome to deepTools GitHub repository! Before opening the issue please check
that the following requirements are met :
using the search tab above. Link the previous issue if appropriate below.
https://www.biostars.org/p/9582427/#9598279
deeptools --version
) and your pythonversion (
python --version
) below.deeptools 3.5.5
Python 3.10.12
(ignore if you simply spotted the issue in the code/documentation).
alignmentSieve -p ${THREADS} --shift 4 -5 --blackListFileName ${BLACKLIST} -b ${BOWTIE2}.clean.bam -o ${BOWTIE2}.shift.tmp
below (ignore if you simply spotted the issue in the code/documentation).
no error. but the ${BOWTIE2}.shift.tmp haven't reads infomation
my input data is single-end data. when i use
alignmentSieve -p ${THREADS} --ATACshift --blackListFileName ${BLACKLIST} -b ${BOWTIE2}.clean.bam -o ${BOWTIE2}.shift.tmp
i can get right result. Is it possible for alignmentSieve to support single-ended data?
If not, what should I do?
The text was updated successfully, but these errors were encountered: