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137 Open 810 Closed
137 Open 810 Closed
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Issues list

Wondering why many sharp peaks created in the deeptools 2.0 heatmap profile
#1348 opened Dec 6, 2024 by zx0223winner
4 tasks
1
plotProfile error on matrix created with --maxThreshold set
#1346 opened Dec 3, 2024 by vojtace
Feature request: Autoscaling
#1338 opened Nov 22, 2024 by dgoekbuget
unsorted multibigwigsummary output file
#1337 opened Nov 21, 2024 by mkaustav84
How to plot heatmap is of ATAC-seq sites at gene promoters
#1335 opened Oct 30, 2024 by Krithika-Bhuvan
deeptools computeGCBias is not compatible with plotly 3.0 or later.
#1333 opened Oct 16, 2024 by ljw20180420
NameError: name 'getSmoothRange' is not defined
#1332 opened Oct 12, 2024 by beyondpie
4 tasks done
1
The documentation of alignmentSieve seems to be wrong.
#1331 opened Oct 11, 2024 by ljw20180420
Natural sort of sample labels in plotCoverage
#1330 opened Oct 9, 2024 by bounlu
Differences in DeepTools Heatmap Resolution Driven by Bed File
#1329 opened Oct 8, 2024 by gwc32007
subset computeMatrix matrix file without computeMatrixOperations
#1326 opened Sep 27, 2024 by BioLaoXu
computeMatrix on 2 regions with replicates
#1318 opened Jul 15, 2024 by asmariyaz23
Does alignmentSieve not support single-ended sequencing data?
#1317 opened Jul 4, 2024 by li1311139481
4 tasks done
How to annotate a region in Heatmap?
#1316 opened Jul 4, 2024 by li1311139481
4 tasks done
Clustering regions in plotHeatmap
#1315 opened Jun 14, 2024 by rikrdo89
1
Unexpected keyword argument 'pdd_inches'
#1314 opened May 30, 2024 by yeeelwy
4 tasks done
bamCoverage [multiBamCoverage]
#1313 opened May 11, 2024 by z5ouyang
1
Documentation clarification needed for --normalizeUsing option in bamCoverage
#1311 opened May 6, 2024 by kalavattam
4 tasks done
RNA-seq bam to bw
#1310 opened May 1, 2024 by Tang-pro
ISSUES for scaling calculation
#1309 opened Apr 26, 2024 by jiangshan529
Using just the read ends in bamCoverage
#1307 opened Apr 10, 2024 by gokceneraslan
What is the samtools flag used in bamPEFragment?
#1306 opened Apr 9, 2024 by gerko0914
the conflict about the pheatmap and multibigwigsummary results
#1296 opened Mar 11, 2024 by liuyu988
1
plotFingerprint bigwig support enhancement
#1290 opened Feb 12, 2024 by annajbott
1
Why enrichment of TSS and TES region are similar when using scale-region
#1274 opened Nov 5, 2023 by haojin9288
1
ProTip! no:milestone will show everything without a milestone.