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Materials and Links
Nina Ihde edited this page Sep 23, 2021
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MIMIC-III has irregular vital parameters and alarm thresholds (but no alarm events)
- MIMIC-III Clinical Database 1.4
- MIMIC website
- MIMIC-III paper
- Guide/scripts Create MIMIC-III in a local Postgres database
- Tutorial Querying MIMIC-III
- Schema mimic-schema-spy
- CSVs following RFC 4180 standard
- "To handle outliers, we make use of a list of clinically reasonable variable ranges provided in the source code repository of Harutyun-yan et al., which was developed in conversation with clinical experts, based on their knowledge of valid clinical measure range." citing this CSV with selected ranges
- HiRID vital parameters with a high(er) time-resolution but no alarm data
- eICU CRD periodic vital parameters (every 5 minutes) but also no alarm data
- TensorFlow tutorial on time series forecasting, but we might want to start simpler with
- (S)ARIMA(X) models, check out https://www.statsmodels.org/stable/index.html and http://alkaline-ml.com/pmdarima/
- Time-series forecasting with Recurrent Neural Networks (RNNs) and Hidden Markov Models (HMMs)
Master Project "Predictive Maintenance for Patients"