Merge branch 'main' of https://github.com/dvklopfenstein/ReactomePy

README.md

@@ -37,7 +37,7 @@ biological models, associated research papers, URLs, and books.
 
 
 ## Links
-  * **Official Reactome Help**:
+  * **Official Reactome Help**
     * [**Reactome Documentation**](https://reactome.org/dev/graph-database)    
     * Support: **help@reactome.org**
     * Or open an issue on GitHub like [this one](https://github.com/neo4j/neo4j/issues/12408) or [driver](https://github.com/neo4j/neo4j-python-driver/issues/365)
@@ -53,7 +53,7 @@ biological models, associated research papers, URLs, and books.
     * [Icon library](https://reactome.org/icon-lib)    
     * [Reactome Graph Database on GitHub](https://github.com/reactome/graph-core)    
 
-  * We use the **Neo4j Python driver** that is [officially supported](https://neo4j.com/developer/python) by Neo4j
+  * This project uses the **Neo4j Python driver** that is [officially supported](https://neo4j.com/developer/python) by Neo4j
     * https://github.com/neo4j/neo4j-python-driver
 
 ## To Cite

doc/md/README_download_hints.md

@@ -101,7 +101,7 @@ neo4j-community-4.1.9/logs/debug.log
 neo4j-community-4.1.9/logs/neo4j.log
 ```
 
-Your neo4j config file is at `/home/neo4j/neo4j/neo4j-community-4.1.9/conf/neo4j.conf` if you see this in the `debug.log` file:
+The neo4j config file is at `/home/neo4j/neo4j/neo4j-community-4.1.9/conf/neo4j.conf` if seen in the `debug.log` file:
 ```
 Neo4j cannot be started because the database files require
 upgrading and upgrades are disabled in the configuration.
@@ -110,7 +110,7 @@ configuration file and try again.
 ```
 
 ### 6. Connect to the server for the first time
-#### You will need to create a password    
+#### Create a password    
 Setting both *Username* and *Password* to *neo4j* worked for us when loading a new Reactome database version for the first time.
 ![Authentification1](/doc/md/images/neo4j_reactome_connect1.png)
 
@@ -124,7 +124,7 @@ To change your password again:
 ### 7. View the Reactome database in the neo4j browser
 In your browser, go to: **http://localhost:7474/browser/**
 
-If you click on the *Database* icon at the upper left corner (which should be green after you click on it), you should see lots of Node Labels:
+Click on the *Database* icon at the upper left corner (which should be green after clicking on it); there should be lots of Node Labels:
 ![success](/doc/md/images/neo4j_reactome_connect3_success.png)    
 ![databases](/doc/md/images/neo4j_reactome_connect4_dbs.png)
 

doc/md/README_gdbdr.md

@@ -19,7 +19,7 @@ gdbdr = GraphDatabase.driver('bolt://localhost:7687', auth=('neo4j', password))
 ```
 
 ### Three Arguments: GraphDatabase.driver(_url_, auth=(_username_, _password_))
-#### 1. _url_: Hover your mouse over the tab to see it.  [NOT the url seen in the browser command-line](#do-not-use-the-url-seen-in-the-command-line).   
+#### 1. _url_: Hover the mouse over the tab to see it.  [NOT the url seen in the browser command-line](#do-not-use-the-url-seen-in-the-command-line).   
 #### 2. _username_: Neo4j username seen with the neo4j command:    
 ```
 :server status
@@ -28,7 +28,7 @@ gdbdr = GraphDatabase.driver('bolt://localhost:7687', auth=('neo4j', password))
 ```
 :server change-password
 ```
-### Use the URL seen when you hover over the tab
+### Use the URL seen when hovering over the tab
 ![driver args](images/python_neo4j_gdbdr.png)
 
 ### Do not use the URL seen in the command line