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Merge pull request #2 from eds-book-gallery/postprint
Postprint - versioning
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,12 @@ | ||
| [bumpversion] | ||
| current_version = v1.0.0 | ||
| commit = True | ||
| tag = True | ||
| parse = (v(?P<major>\d+))(.(?P<minor>\d+))(.(?P<patch>\d+)) | ||
| serialize = v{major}.{minor}.{patch} | ||
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| [bumpversion:file:CITATION.cff] | ||
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| [bumpversion:file:notebook.ipynb] | ||
| search = "print('Notebook repository version: {current_version}')\n" | ||
| replace = "print('Notebook repository version: {new_version}')\n" |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,74 @@ | ||
| name: Preview | ||
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| on: | ||
| workflow_run: | ||
| workflows: ["Build and push container image"] | ||
| branches: [postprint] | ||
| types: [completed] | ||
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| # This job installs dependencies, build the jupyter notebook, and pushes it to `preview`, a new `branch` | ||
| jobs: | ||
| on-success: | ||
| runs-on: ubuntu-latest | ||
| if: ${{ github.repository_owner == 'eds-book-gallery' && github.event.workflow_run.conclusion == 'success' }} | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| steps: | ||
| - name: Check conditions meet | ||
| run: echo 'The triggering workflow passed' | ||
| - uses: actions/checkout@v2 | ||
| with: | ||
| ref: postprint | ||
| # Set notebook name | ||
| - name: Get properties from the config file | ||
| id: config_file | ||
| uses: notiz-dev/github-action-json-property@release | ||
| with: | ||
| path: '.github/config.json' | ||
| prop_path: 'notebook_name' | ||
| # Set quay image | ||
| - name: Get properties from the config file | ||
| id: config_quay | ||
| uses: notiz-dev/github-action-json-property@release | ||
| with: | ||
| path: '.github/config.json' | ||
| prop_path: 'quay_image' | ||
| # Set kernel name | ||
| - name: Get properties from the config file | ||
| id: config_kernel | ||
| uses: notiz-dev/github-action-json-property@release | ||
| with: | ||
| path: '.github/config.json' | ||
| prop_path: 'kernel' | ||
| # Render the notebook | ||
| - name: Run the build process with Docker | ||
| uses: addnab/docker-run-action@v3 | ||
| with: | ||
| image: quay.io/${{steps.config_quay.outputs.prop}}:latest | ||
| options: --user root -v ${{ github.workspace }}:/tmp | ||
| shell: bash | ||
| run: | | ||
| v=$(jupyter kernelspec list | awk '{print $1}' | egrep ${{steps.config_kernel.outputs.prop}}) | ||
| jupyter-nbconvert --to notebook --ExecutePreprocessor.kernel_name="$v" --inplace --execute ${{steps.config_file.outputs.prop}} | ||
| cp ${{steps.config_file.outputs.prop}} /tmp | ||
| - name: Commit | ||
| run: | | ||
| ls | ||
| git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com" | ||
| git config --local user.name "github-actions[bot]" | ||
| git rm \* ':!${{steps.config_file.outputs.prop}}' | ||
| git add ${{steps.config_file.outputs.prop}} | ||
| git commit -m 'update' | ||
| - name: Push | ||
| uses: ad-m/github-push-action@master | ||
| with: | ||
| github_token: ${{ secrets.GITHUB_TOKEN }} | ||
| branch: preview | ||
| force: true | ||
| on-failure: | ||
| runs-on: ubuntu-latest | ||
| if: ${{ github.repository_owner == 'eds-book-gallery' && github.event.workflow_run.conclusion == 'failure' }} | ||
| steps: | ||
| - name: Check conditions meet | ||
| run: echo 'The triggering workflow failed' |
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,4 +1,4 @@ | ||
| name: test container image build | ||
| name: Test container image build | ||
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| on: | ||
| pull_request: | ||
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,22 @@ | ||
| cff-version: 1.2.0 | ||
| title: "Tree crown detection using DeepForest" | ||
| message: "If you use this software, please cite it using the metadata from this file." | ||
| type: software | ||
| authors: | ||
| - family-names: Coca-Castro | ||
| given-names: Alejandro | ||
| website: https://github.com/acocac | ||
| affiliation: The Alan Turing Institute | ||
| - name: "This EDS book notebook contributors" | ||
| website: "https://github.com/eds-book-gallery/15d986da-2d7c-44fb-af71-700494485def/graphs/contributors" | ||
| version: v1.0.0 # This is automatically set using the bumpversion tool. | ||
| identifiers: | ||
| - type: doi | ||
| value: TBA | ||
| description: The concept DOI for the collection containing all versions of the notebook. | ||
| abstract: "Notebook developed to demonstrate how to detect tree crown using a state-of-art Deep Learning model for object detection." | ||
| keywords: | ||
| - Environmental Data Science | ||
| - Forest | ||
| - Modelling | ||
| - Deep learning |
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