compare_nii_gif

Create a gif that compares nifti files in axial, sagittal, and coronal views.

Install

pip install git+https://github.com/epongpipat/compare_nii_gif.git

Usage

compare_nii_gif -i <in_path1> <in_path2> -o <out_path>

Example

An example comparing my raw versus brain extracted T1w image.

compare_nii_gif -i T1w_raw.nii.gz T1w_bet.nii.gz -o example.gif --titles raw bet

We can also manually adjust the slices.

compare_nii_gif -i T1w_raw.nii.gz T1w_bet.nii.gz -o example.gif --titles raw bet -z -80 -70 -60 -50 -40 -30 -20 -10 0 10 20 30 40