kaiko-jsl-workshop

Use the databricks kaiko-nki workspace.

Work in teams

Explore the John Snow Labs (clinical) NLP offerings - tools and pre-trained models.

• TEAM A - Axel, Bala, Vlad
• TEAM B - Asli, Edwin, Ioannis
• TEAM C - Nanne, Eqbal, Sebastian
• TEAM D - Fei, Marijn, Niels
• TEAM E - Alexandre, Mark, Robert J.
• TEAM F - Owen, Joost

Morning

Getting started

• notebooks:
  • clone the jsl kaiko notebook repo into your own databricks folder.
  • create your own branch (or team branch).
• cluster:
  • start with using the pre-configure John Snow Labs cluster.
  • if you need to work with custom libraries use this script to configure your own cluster.

Recommended notebooks (all morning)

... in Healthcare NLP to work through in detail (including all linked recsources)

1. Entity Extraction (15)
2. Data Analysis (16)
3. Oncology Models (22)
4. Automating De-Identification (4) (there are 2 4s)

Other topics covered in the notebooks:

• OCR
• image de-identification
• model training
• pre-trained models
• knowledge-graphs

Choose your favorite topic. Prepare a quick (10min) presentation of it(just before lunch)

Can take form of either

• slides
• notebooks
• dashboard

Afternoon

Presentation of each group (10min each)

Pick topic to deep-dive (all afternoon)

more to come...

Additional resources

• John Snowlab Github
  • MT data scraper
• JSL slack
• JSL model hub