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26 Open 89 Closed
26 Open 89 Closed
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Issues list

Implement HMMER's handling of X's (for protein) and N's (for DNA) enhancement
#117 opened Jun 14, 2020 by ihh
Implement intersection for I/O transducers enhancement
#106 opened Feb 20, 2019 by ihh
Poly-A tail length caller application nanopore
#105 opened Dec 6, 2018 by ihh
Graph-grammar decoding enhancement
#104 opened Nov 20, 2018 by ihh
1
Cancer signature models application enhancement
#99 opened Nov 9, 2018 by ihh
State & transition merging enhancement nanopore
#98 opened Nov 9, 2018 by ihh
COSMIC gene fusion models application nanopore
#89 opened Oct 15, 2018 by ihh
Add test for --memoize, including idempotence bug test
#68 opened Aug 13, 2018 by ihh
Banded initializer for Envelope enhancement
#66 opened Aug 11, 2018 by ihh
Rename presets consistently
#64 opened Aug 2, 2018 by ihh
ham output compiler enhancement
#63 opened Aug 2, 2018 by ihh
HMMoC output compiler enhancement
#62 opened Aug 2, 2018 by ihh
StochHMM output compiler enhancement
#61 opened Aug 2, 2018 by ihh
BCR annotation from V(D)J-aware HMM application
#60 opened Aug 2, 2018 by ihh
Parse ham yaml files enhancement
#59 opened Aug 2, 2018 by ihh
1
Add --data-stockholm option to specify training data as file of pairwise alignments enhancement
#58 opened Aug 2, 2018 by ihh
1
Protein-to-basecalled-read with nanopore-trained error model application nanopore
#57 opened Aug 2, 2018 by ihh
Transmembrane protein prediction from DNA application
#56 opened Aug 2, 2018 by ihh
CUDA code generation compiler
#53 opened Jul 25, 2018 by ihh
Bitstutter indel test compiler test
#50 opened Jul 24, 2018 by ihh
Protein to DNA test (compiled) compiler test
#44 opened Jul 21, 2018 by ihh
Protein to DNA tests test
#43 opened Jul 21, 2018 by ihh
Simulator enhancement
#42 opened Jul 21, 2018 by ihh
1
Protein HMM to DNA test (compiled) compiler test
#41 opened Jul 21, 2018 by ihh
Protein HMM to RNN test compiler nanopore test
#33 opened Jul 10, 2018 by ihh
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