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Expand source genomes available for comparative genomics #174

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merged 2 commits into from
Oct 29, 2019

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eweitz
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@eweitz eweitz commented Oct 29, 2019

Studying worm (C. elegans), zebrafish (Danio rerio), chicken (Gallus gallus), soybean (Glycine max), or any other organism that has a chromosome-level assembly? Now you can compare genes in that organism to other organisms.

This is possible because Ideogram can now use organisms that lack centromere data as a source genome in orthology analysis.

Example showing where the zebrafish myod1 gene exists in the human genome:
ideogram_zebrafish_human_ortholog

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Coverage Status

Coverage decreased (-0.2%) to 90.626% when pulling 1984e6d on centromereless-source into 546cd0f on master.

@eweitz eweitz merged commit aa028d1 into master Oct 29, 2019
@eweitz eweitz deleted the centromereless-source branch December 23, 2019 11:59
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