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Restore centromere rendering #64

Merged
merged 29 commits into from
Feb 18, 2017
Merged

Restore centromere rendering #64

merged 29 commits into from
Feb 18, 2017

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eweitz
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@eweitz eweitz commented Feb 18, 2017

This re-enables support for the display of centromeres in all eukaryotes (#58, #61).

The original implementation was broken by significant changes in Ideogram's code organization to support ploidy (#47). Support for centromeres and support for ploidy were implemented in parallel, and deploying the latter took precedence as it was added by a new contributor. This pull request is essentially a complex deferred merge.

Chimpanzee genome, with centromeres in pink:
http://eweitz.github.io/ideogram/eukaryotes.html?org=pan-troglodytes
chimpanzee-genome-with-centromeres

This work also makes chromosome data files more consistent, which almost automatically enriches the rat ideogram.

Rat genome, with cytogenetic bands:
http://eweitz.github.io/ideogram/eukaryotes.html?org=rattus-norvegicus
rat-genome-with-cytogenetic-bands

eweitz added 29 commits January 15, 2017 12:28
@eweitz eweitz merged commit f63a0a0 into master Feb 18, 2017
@eweitz eweitz deleted the restore-eukaryotic-centromeres branch March 1, 2017 04:53
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