Revert broken AbstractAnalysisRunner

exomiser · Feb 22, 2024 · 1e3ea65 · 1e3ea65
1 parent f215a90
commit 1e3ea65
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/...re/src/main/java/org/monarchinitiative/exomiser/core/analysis/AbstractAnalysisRunner.java b/...re/src/main/java/org/monarchinitiative/exomiser/core/analysis/AbstractAnalysisRunner.java
@@ -131,7 +131,7 @@ public AnalysisResults run(Sample sample, Analysis analysis) {
         List<Gene> genesToScore = variantsLoaded ? getGenesWithVariants(allGenes) : allGenes.values().stream().filter(genesToScore()).toList();
         // Temporarily add a new PValueGeneScorer so as not to break semver will revert to RawScoreGeneScorer in 14.0.0
         CombinedScorePvalueCalculator combinedScorePvalueCalculator = buildCombinedScorePvalueCalculator(sample, analysis, genesToScore.size());
-        GeneScorer geneScorer = new PvalueGeneScorer(probandIdentifier, sample.getSex(), inheritanceModeAnnotator, combinedScorePvalueCalculator, genomeAnalysisService);
+        GeneScorer geneScorer = new PvalueGeneScorer(probandIdentifier, sample.getSex(), inheritanceModeAnnotator, combinedScorePvalueCalculator);
 
         logger.info("Scoring genes");
         List<Gene> genes = geneScorer.scoreGenes(genesToScore);