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1. powerbacgwas powerbacgwas Public

   PowerBacGWAS: Power calculations for Bacterial GWAS

   Python 12

2. amr_efm_wgs amr_efm_wgs Public

   ARIBA-based pipeline for genotypic prediction of AMR from whole-genome sequences of Enterococcus faecium

   Python 5

3. mrsa_snp_cut-off mrsa_snp_cut-off Public

   R

4. phylogenetic_clustering phylogenetic_clustering Public

   Script to perform phylogenetic partitioning/clustering

   R

5. scripts scripts Public

   variety of different bioinformatic scripts

   Python

6. ward_movement_plot ward_movement_plot Public

   R script used to plot hospital ward visits on a timeline, along with sampling information

   PostScript