Skip to content

Commit

Permalink
Merge pull request #693 from planemo-autoupdate/workflows/VGP-assembl…
Browse files Browse the repository at this point in the history
…y-v2/Assembly-Hifi-Trio-phasing-VGP5

Updating workflows/VGP-assembly-v2/Assembly-Hifi-Trio-phasing-VGP5 from 0.7 to 0.8
  • Loading branch information
Delphine-L authored Feb 25, 2025
2 parents 48414bc + d01b00f commit 7a7af2f
Show file tree
Hide file tree
Showing 2 changed files with 14 additions and 9 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@
],
"format-version": "0.1",
"license": "CC-BY-4.0",
"release": "0.7",
"release": "0.8",
"name": "Assembly-Hifi-Trio-phasing-VGP5",
"report": {
"markdown": "\n# Workflow Execution Report\n\nTime workflow was invoked:\n\n```galaxy\ninvocation_time()\n```\nGalaxy version :\n\n```galaxy\ngenerate_galaxy_version()\n```\n\n## Raw unitig graph\n\n```galaxy\nhistory_dataset_as_image(output=\"raw unitig graph image\")\n```\n\n## Merqury results\n\n### Merqury QV\n\n```galaxy\nhistory_dataset_as_table(output=merqury_stats)\n```\n\n### Merqury completeness\n\n```galaxy\nhistory_dataset_as_table(output=\"merqury_stats\")\n```\n\n### Merqury plots\n\n\nspectra-cn:\n\n\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.spectra-cn.fl\")\n```\n\nspectra-asm:\n\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.spectra-asm.fl\")\n```\n\n\nhap1 spectra-cn:\n\n\r\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.assembly_01.spectra-cn.fl\")\n```\r\n\n\nhap2 spectra-cn:\n\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.assembly_02.spectra-cn.fl\")\n```\n\n## BUSCO results (Vertebrata database)\n\nHap1\n\n```galaxy\nhistory_dataset_as_image(output=\"Busco Summary Image Hap1\")\n```\n\nHap2\n\n```galaxy\nhistory_dataset_as_image(output=\"Busco Summary Image Hap2\")\n```\n\n## Assembly statistics\n\n\n```galaxy\nhistory_dataset_as_table(output=\"clean_stats\")\n```\n\n\n## Nx and Size plots\n\n\n```galaxy\nhistory_dataset_as_image(output=\"Nx Plot\")\n```\n\n\n```galaxy\nhistory_dataset_as_image(output=\"Size Plot\")\n```\n\n\n\n## Current Workflow\n```galaxy\nworkflow_display()\n```\n"
Expand Down Expand Up @@ -696,7 +696,7 @@
},
"21": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy1",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3",
"errors": null,
"id": 21,
"input_connections": {
Expand All @@ -723,15 +723,15 @@
"top": 79.2265625
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy1",
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3",
"tool_shed_repository": {
"changeset_revision": "d2aaac19f42f",
"changeset_revision": "31c42a2c02d3",
"name": "multiqc",
"owner": "iuc",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"cutadapt\", \"__current_case__\": 5, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "1.27+galaxy1",
"tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"image_content_input\": {\"__class__\": \"RuntimeValue\"}, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"cutadapt\", \"__current_case__\": 5, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "1.27+galaxy3",
"type": "tool",
"uuid": "b64b5b58-cf21-4fb6-af57-2e8a56e85142",
"when": null,
Expand Down Expand Up @@ -2467,7 +2467,7 @@
}
},
"tags": [],
"uuid": "e7ad70ed-bd55-4aa9-8d15-4270fcb26a4a"
"uuid": "990af8e2-a18e-48ae-892a-49aae5092106"
},
"tool_id": null,
"type": "subworkflow",
Expand Down Expand Up @@ -2849,7 +2849,7 @@
}
},
"tags": [],
"uuid": "4c500cfb-8a3b-4dae-a3d4-f9fe64c3ce67"
"uuid": "29af7a41-b2d8-4fba-aede-69a68ede37dd"
},
"tool_id": null,
"type": "subworkflow",
Expand Down Expand Up @@ -3741,7 +3741,7 @@
}
},
"tags": [],
"uuid": "731cd3ad-6798-4c4c-90bc-c0d8e640383f"
"uuid": "d8c8ce81-8cf6-40fb-8c13-d2357df044d9"
},
"tool_id": null,
"type": "subworkflow",
Expand Down
Original file line number Diff line number Diff line change
@@ -1,5 +1,10 @@
# Changelog

## [0.8] 2025-02-24

### Automatic update
- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.27+galaxy3`

## [0.7] 2025-02-17

### Automatic update
Expand Down

0 comments on commit 7a7af2f

Please # to comment.