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Updating workflows/microbiome/allele-based-pathogen-identification from 0.1.2 to 0.1.3 #679

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Hello! This is an automated update of the following workflow: workflows/microbiome/allele-based-pathogen-identification. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.28+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.28+galaxy1

The workflow release number has been updated from 0.1.2 to 0.1.3.

If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
Any commit from another author than 'planemo-autoupdate' will prevent more auto-updates.
To ignore manual changes and allow autoupdates, delete the branch.

@gxydevbot gxydevbot changed the title Updating workflows/microbiome/allele-based-pathogen-identification from 0.1.2 to 0.1.3 Updating workflows/microbiome/allele-based-pathogen-identification from 0.1.2 to 0.1.3 Feb 17, 2025
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot gxydevbot force-pushed the workflows/microbiome/allele-based-pathogen-identification branch from 5d59f07 to 9a49e26 Compare February 17, 2025 05:28
@gxydevbot gxydevbot force-pushed the workflows/microbiome/allele-based-pathogen-identification branch from 9a49e26 to 7ecd1e5 Compare February 24, 2025 05:41
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There are new updates, they have been integrated to the PR, check the file diff.

Really need to fix this ...
@mvdbeek mvdbeek merged commit 1562378 into galaxyproject:main Feb 27, 2025
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2 participants