Workaround for lack of relaxation in ROBOT.

ontodev/robot#1183 (comment)
geneontology · Mar 7, 2024 · 3e6d272 · 3e6d272
1 parent d7e7c70
commit 3e6d272
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Showing 2 changed files with 15 additions and 2 deletions.
diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -130,7 +130,9 @@ ANNOTATE_VERSION_IRI = annotate -V $(ONTBASE)/releases/`date +%Y-%m-%d`/$@.owl
 
 # by default we use ELK to perform a reason-relax-reduce chain
 # after that we annotate the ontology with the release versionInfo
-$(ONT).owl: $(SRC)
+$(SRC).relaxed.obo: $(SRC)
+	./relax-qcrs.pl $< > $@.tmp && mv $@.tmp $@
+$(ONT).owl: $(SRC).relaxed.obo
 	$(ROBOT) reason --input $< --reasoner ELK \
 		 relax \
 		 reduce -r ELK \
@@ -235,7 +237,7 @@ IM=build-$(ONT)
 build-docker:
 	docker build -t $(ONT) .
 
-
+include upa.Makefile
 
 
 

diff --git a/src/ontology/relax-qcrs.pl b/src/ontology/relax-qcrs.pl
@@ -0,0 +1,11 @@
+#!/usr/bin/perl
+
+while (<>) {
+    print;
+    if (m@cardinality="(\d+)"@) {
+        if ($1) {
+          s@\s+\{.*\} *@ @;
+          print;
+        }
+    }
+}