Bump org.apache.parquet:parquet-avro from 1.13.1 to 1.14.3 #1211
Google Cloud Build / fhir-data-pipes-pr (cloud-build-fhir)
failed
Nov 15, 2024 in 23m 1s
Summary
Build Information
Trigger | fhir-data-pipes-pr |
Build | 5f0605a7-ec38-4103-8151-75f62225b668 |
Start | 2024-11-15T11:42:03-08:00 |
Duration | 22m12.099s |
Status | FAILURE |
Steps
Step | Status | Duration |
---|---|---|
Launch HAPI Source Server | SUCCESS | 30.813s |
Launch Sink Server Search | SUCCESS | 28.773s |
Launch Sink Server JDBC | SUCCESS | 28.832s |
Wait for the initial Servers Start | SUCCESS | 1m4.594s |
Compile Bunsen and Pipeline | SUCCESS | 6m26.752s |
Build Uploader Image | SUCCESS | 29.105s |
Run Uploader Unit Tests | SUCCESS | 2.285s |
Build E2E Image | SUCCESS | 2m21.718s |
Upload to HAPI | SUCCESS | 1m31.178s |
Build Pipeline Images | SUCCESS | 21.537s |
Run Batch Pipeline in FHIR-search mode with HAPI source | SUCCESS | 57.64s |
Run E2E Test for FHIR-search mode with HAPI source | SUCCESS | 10.012s |
Run Batch Pipeline for JDBC mode with HAPI source | SUCCESS | 55.545s |
Run E2E Test for JDBC mode with HAPI source | SUCCESS | 8.544s |
Run Batch Pipeline for BULK_EXPORT mode with HAPI source | SUCCESS | 4m15.149s |
Run E2E Test for BULK_EXPORT mode with HAPI source | SUCCESS | 7.611s |
Turn down FHIR Sink Server Search | SUCCESS | 4.33s |
Turn down FHIR Sink Server JDBC | SUCCESS | 6.118s |
Create views database | SUCCESS | 732ms |
Launch HAPI FHIR Sink Server Controller | SUCCESS | 4.138s |
Bring up controller and Spark containers | SUCCESS | 12m55.044s |
Run E2E Test for Dockerized Controller and Spark Thriftserver | FAILURE | 53.599s |
Bring down controller and Spark containers | QUEUED | 33.052s |
Turn down HAPI Source Server | QUEUED | 3m11.792s |
Turn down FHIR Sink Server Controller for e2e tests | QUEUED | 51.261s |
Launch OpenMRS Server and HAPI FHIR Sink Server for OpenMRS | SUCCESS | 7.098s |
Wait for Servers Start | SUCCESS | 3m55.883s |
Launch Streaming Pipeline | SUCCESS | 1m0.644s |
Run E2E Test for STREAMING, using OpenMRS Source | SUCCESS | 0s |
Upload to OpenMRS | SUCCESS | 0s |
Run Batch Pipeline FHIR-search mode with OpenMRS source | CANCELLED | 0s |
Run E2E Test for FHIR-search mode with OpenMRS source | QUEUED | 0s |
Run Batch Pipeline for JDBC mode with OpenMRS source | QUEUED | 0s |
Run E2E Test for JDBC mode with OpenMRS source | QUEUED | 0s |
Test Indicators | QUEUED | 0s |
Turn down Webserver and HAPI Server | QUEUED | 0s |
Details
starting build "5f0605a7-ec38-4103-8151-75f62225b668"
FETCHSOURCE
hint: Using 'master' as the name for the initial branch. This default branch name
hint: is subject to change. To configure the initial branch name to use in all
hint: of your new repositories, which will suppress this warning, call:
hint:
hint: git config --global init.defaultBranch <name>
hint:
hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
hint: 'development'. The just-created branch can be renamed via this command:
hint:
hint: git branch -m <name>
Initialized empty Git repository in /workspace/.git/
From https://github.com/google/fhir-data-pipes
* branch 6baa6e6c2c5c4145216b407bd754a23d753efb4d -> FETCH_HEAD
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Updating files: 100% (978/978), done.
HEAD is now at 6baa6e6 Merge branch 'master' into dependabot/maven/org.apache.parquet-parquet-avro-1.14.3
BUILD
Starting Step #0 - "Launch HAPI Source Server"
Starting Step #7 - "Build E2E Image"
Starting Step #1 - "Launch Sink Server Search"
Starting Step #2 - "Launch Sink Server JDBC"
Starting Step #4 - "Compile Bunsen and Pipeline"
Starting Step #5 - "Build Uploader Image"
Step #0 - "Launch HAPI Source Server": Pulling image: docker/compose
Step #1 - "Launch Sink Server Search": Pulling image: docker/compose
Step #4 - "Compile Bunsen and Pipeline": Pulling image: maven:3.8.5-openjdk-17
Step #2 - "Launch Sink Server JDBC": Pulling image: docker/compose
Step #5 - "Build Uploader Image": Already have image (with digest): gcr.io/cloud-builders/docker
Step #7 - "Build E2E Image": Already have image (with digest): gcr.io/cloud-builders/docker
Step #1 - "Launch Sink Server Search": Using default tag: latest
Step #0 - "Launch HAPI Source Server": Using default tag: latest
Step #2 - "Launch Sink Server JDBC": Using default tag: latest
Step #5 - "Build Uploader Image": Sending build context to Docker daemon 1.466MB
Step #5 - "Build Uploader Image": Step 1/10 : FROM python:3.7-slim
Step #7 - "Build E2E Image": Sending build context to Docker daemon 66.43MB
Step #7 - "Build E2E Image": Step 1/14 : FROM maven:3.8.7-eclipse-temurin-17-focal
Step #0 - "Launch HAPI Source Server": latest: Pulling from docker/compose
Step #0 - "Launch HAPI Source Server": aad63a933944: Pulling fs layer
Step #0 - "Launch HAPI Source Server": b396cd7cbac4: Pulling fs layer
Step #0 - "Launch HAPI Source Server": 0426ec0ed60a: Pulling fs layer
Step #0 - "Launch HAPI Source Server": 9ac2a98ece5b: Pulling fs layer
Step #0 - "Launch HAPI Source Server": 9ac2a98ece5b: Waiting
Step #1 - "Launch Sink Server Search": latest: Pulling from docker/compose
Step #1 - "Launch Sink Server Search": aad63a933944: Pulling fs layer
Step #1 - "Launch Sink Server Search": b396cd7cbac4: Pulling fs layer
Step #1 - "Launch Sink Server Search": 0426ec0ed60a: Pulling fs layer
Step #1 - "Launch Sink Server Search": 9ac2a98ece5b: Pulling fs layer
Step #1 - "Launch Sink Server Search": 9ac2a98ece5b: Waiting
Step #1 - "Launch Sink Server Search": b396cd7cbac4: Download complete
Step #0 - "Launch HAPI Source Server": b396cd7cbac4: Download complete
Step #4 - "Compile Bunsen and Pipeline": 3.8.5-openjdk-17: Pulling from library/maven
Step #7 - "Build E2E Image": 3.8.7-eclipse-temurin-17-focal: Pulling from library/maven
Step #0 - "Launch HAPI Source Server": aad63a933944: Verifying Checksum
Step #0 - "Launch HAPI Source Server": aad63a933944: Download complete
Step #1 - "Launch Sink Server Search": aad63a933944: Verifying Checksum
Step #1 - "Launch Sink Server Search": aad63a933944: Download complete
Step #2 - "Launch Sink Server JDBC": latest: Pulling from docker/compose
Step #2 - "Launch Sink Server JDBC": aad63a933944: Pulling fs layer
Step #2 - "Launch Sink Server JDBC": b396cd7cbac4: Pulling fs layer
Step #2 - "Launch Sink Server JDBC": 0426ec0ed60a: Pulling fs layer
Step #2 - "Launch Sink Server JDBC": 9ac2a98ece5b: Pulling fs layer
Step #2 - "Launch Sink Server JDBC": 9ac2a98ece5b: Waiting
Step #2 - "Launch Sink Server JDBC": b396cd7cbac4: Download complete
Step #5 - "Build Uploader Image": 3.7-slim: Pulling from library/python
Step #0 - "Launch HAPI Source Server": aad63a933944: Pull complete
Step #2 - "Launch Sink Server JDBC": aad63a933944: Pull complete
Step #1 - "Launch Sink Server Search": aad63a933944: Pull complete
Step #1 - "Launch Sink Server Search": b396cd7cbac4: Pull complete
Step #2 - "Launch Sink Server JDBC": b396cd7cbac4: Pull complete
Step #0 - "Launch HAPI Source Server": b396cd7cbac4: Pull complete
Step #7 - "Build E2E Image": 7608715873ec: Pulling fs layer
Step #7 - "Build E2E Image": 64a0b7566174: Pulling fs layer
Step #7 - "Build E2E Image": 414e25888ba9: Pulling fs layer
Step #7 - "Build E2E Image": fa1796814410: Pulling fs layer
Step #7 - "Build E2E Image": dc3ab4515b24: Pulling fs layer
Step #7 - "Build E2E Image": 495d1ae42cb9: Pulling fs layer
Step #7 - "Build E2E Image": 64a0b7566174: Waiting
Step #7 - "Build E2E Image": 66b6d86e5b33: Pulling fs layer
Step #7 - "Build E2E Image": 90062ecd5dec: Pulling fs layer
Step #7 - "Build E2E Image": 414e25888ba9: Waiting
Step #7 - "Build E2E Image": fa1796814410: Waiting
Step #7 - "Build E2E Image": dc3ab4515b24: Waiting
Step #7 - "Build E2E Image": 495d1ae42cb9: Waiting
Step #7 - "Build E2E Image": 90062ecd5dec: Waiting
Step #7 - "Build E2E Image": 66b6d86e5b33: Waiting
Step #4 - "Compile Bunsen and Pipeline": 38a980f2cc8a: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": de849f1cfbe6: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": a7203ca35e75: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": 3337662e6dc9: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": 81485058ab89: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": b548970362bb: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": dbd02ad382f5: Pulling fs layer
Step #4 - "Compile Bunsen and Pipeline": 3337662e6dc9: Waiting
Step #4 - "Compile Bunsen and Pipeline": 81485058ab89: Waiting
Step #4 - "Compile Bunsen and Pipeline": b548970362bb: Waiting
Step #4 - "Compile Bunsen and Pipeline": dbd02ad382f5: Waiting
Step #4 - "Compile Bunsen and Pipeline": 38a980f2cc8a: Waiting
Step #4 - "Compile Bunsen and Pipeline": de849f1cfbe6: Waiting
Step #4 - "Compile Bunsen and Pipeline": a7203ca35e75: Waiting
Step #2 - "Launch Sink Server JDBC": 0426ec0ed60a: Download complete
Step #0 - "Launch HAPI Source Server": 0426ec0ed60a: Download complete
Step #1 - "Launch Sink Server Search": 0426ec0ed60a: Verifying Checksum
Step #1 - "Launch Sink Server Search": 0426ec0ed60a: Download complete
Step #2 - "Launch Sink Server JDBC": 9ac2a98ece5b: Verifying Checksum
Step #2 - "Launch Sink Server JDBC": 9ac2a98ece5b: Download complete
Step #0 - "Launch HAPI Source Server": 9ac2a98ece5b: Download complete
Step #1 - "Launch Sink Server Search": 9ac2a98ece5b: Verifying Checksum
Step #1 - "Launch Sink Server Search": 9ac2a98ece5b: Download complete
Step #5 - "Build Uploader Image": a803e7c4b030: Pulling fs layer
Step #5 - "Build Uploader Image": bf3336e84c8e: Pulling fs layer
Step #5 - "Build Uploader Image": 8973eb85275f: Pulling fs layer
Step #5 - "Build Uploader Image": f9afc3cc0135: Pulling fs layer
Step #5 - "Build Uploader Image": 39312d8b4ab7: Pulling fs layer
Step #5 - "Build Uploader Image": f9afc3cc0135: Waiting
Step #5 - "Build Uploader Image": a803e7c4b030: Waiting
Step #5 - "Build Uploader Image": bf3336e84c8e: Waiting
Step #5 - "Build Uploader Image": 8973eb85275f: Waiting
Step #5 - "Build Uploader Image": 39312d8b4ab7: Waiting
Step #1 - "Launch Sink Server Search": 0426ec0ed60a: Pull complete
Step #0 - "Launch HAPI Source Server": 0426ec0ed60a: Pull complete
Step #2 - "Launch Sink Server JDBC": 0426ec0ed60a: Pull complete
Step #1 - "Launch Sink Server Search": 9ac2a98ece5b: Pull complete
Step #0 - "Launch HAPI Source Server": 9ac2a98ece5b: Pull complete
Step #2 - "Launch Sink Server JDBC": 9ac2a98ece5b: Pull complete
Step #0 - "Launch HAPI Source Server": Digest: sha256:b60a020c0f68047b353a4a747f27f5e5ddb17116b7b018762edfb6f7a6439a82
Step #2 - "Launch Sink Server JDBC": Digest: sha256:b60a020c0f68047b353a4a747f27f5e5ddb17116b7b018762edfb6f7a6439a82
Step #1 - "Launch Sink Server Search": Digest: sha256:b60a020c0f68047b353a4a747f27f5e5ddb17116b7b018762edfb6f7a6439a82
Step #2 - "Launch Sink Server JDBC": Status: Downloaded newer image for docker/compose:latest
Step #0 - "Launch HAPI Source Server": Status: Downloaded newer image for docker/compose:latest
Step #1 - "Launch Sink Server Search": Status: Image is up to date for docker/compose:latest
Step #1 - "Launch Sink Server Search": docker.io/docker/compose:latest
Step #0 - "Launch HAPI Source Server": docker.io/docker/compose:latest
Step #2 - "Launch Sink Server JDBC": docker.io/docker/compose:latest
Step #7 - "Build E2E Image": 64a0b7566174: Verifying Checksum
Step #7 - "Build E2E Image": 64a0b7566174: Download complete
Step #7 - "Build E2E Image": 7608715873ec: Verifying Checksum
Step #7 - "Build E2E Image": 7608715873ec: Download complete
Step #7 - "Build E2E Image": fa1796814410: Download complete
Step #7 - "Build E2E Image": dc3ab4515b24: Verifying Checksum
Step #7 - "Build E2E Image": dc3ab4515b24: Download complete
Step #7 - "Build E2E Image": 66b6d86e5b33: Verifying Checksum
Step #7 - "Build E2E Image": 66b6d86e5b33: Download complete
Step #7 - "Build E2E Image": 7608715873ec: Pull complete
Step #7 - "Build E2E Image": 495d1ae42cb9: Verifying Checksum
Step #7 - "Build E2E Image": 495d1ae42cb9: Download complete
Step #7 - "Build E2E Image": 414e25888ba9: Verifying Checksum
Step #7 - "Build E2E Image": 414e25888ba9: Download complete
Step #7 - "Build E2E Image": 90062ecd5dec: Verifying Checksum
Step #7 - "Build E2E Image": 90062ecd5dec: Download complete
Step #4 - "Compile Bunsen and Pipeline": 38a980f2cc8a: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": 38a980f2cc8a: Download complete
Step #7 - "Build E2E Image": 64a0b7566174: Pull complete
Step #4 - "Compile Bunsen and Pipeline": de849f1cfbe6: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": de849f1cfbe6: Download complete
Step #4 - "Compile Bunsen and Pipeline": 81485058ab89: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": 81485058ab89: Download complete
Step #4 - "Compile Bunsen and Pipeline": b548970362bb: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": b548970362bb: Download complete
Step #4 - "Compile Bunsen and Pipeline": 38a980f2cc8a: Pull complete
Step #4 - "Compile Bunsen and Pipeline": dbd02ad382f5: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": dbd02ad382f5: Download complete
Step #4 - "Compile Bunsen and Pipeline": de849f1cfbe6: Pull complete
Step #4 - "Compile Bunsen and Pipeline": a7203ca35e75: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": a7203ca35e75: Download complete
Step #4 - "Compile Bunsen and Pipeline": 3337662e6dc9: Verifying Checksum
Step #4 - "Compile Bunsen and Pipeline": 3337662e6dc9: Download complete
Step #5 - "Build Uploader Image": a803e7c4b030: Verifying Checksum
Step #5 - "Build Uploader Image": a803e7c4b030: Download complete
Step #5 - "Build Uploader Image": bf3336e84c8e: Verifying Checksum
Step #5 - "Build Uploader Image": bf3336e84c8e: Download complete
Step #2 - "Launch Sink Server JDBC": Creating volume "sink-server-jdbc_hapi-data" with default driver
Step #5 - "Build Uploader Image": 8973eb85275f: Verifying Checksum
Step #5 - "Build Uploader Image": 8973eb85275f: Download complete
Step #7 - "Build E2E Image": 414e25888ba9: Pull complete
Step #7 - "Build E2E Image": fa1796814410: Pull complete
Step #5 - "Build Uploader Image": f9afc3cc0135: Download complete
Step #0 - "Launch HAPI Source Server": Creating network "hapi-compose_default" with the default driver
Step #1 - "Launch Sink Server Search": Creating volume "sink-server-search_hapi-data" with default driver
Step #5 - "Build Uploader Image": 39312d8b4ab7: Verifying Checksum
Step #5 - "Build Uploader Image": 39312d8b4ab7: Download complete
Step #0 - "Launch HAPI Source Server": Creating volume "hapi-compose_hapi-fhir-db" with default driver
Step #2 - "Launch Sink Server JDBC": Pulling sink-server (hapiproject/hapi:latest)...
Step #5 - "Build Uploader Image": a803e7c4b030: Pull complete
Step #0 - "Launch HAPI Source Server": Creating volume "hapi-compose_hapi-server" with default driver
Step #5 - "Build Uploader Image": bf3336e84c8e: Pull complete
Step #1 - "Launch Sink Server Search": Pulling sink-server (hapiproject/hapi:latest)...
Step #7 - "Build E2E Image": dc3ab4515b24: Pull complete
Step #7 - "Build E2E Image": 495d1ae42cb9: Pull complete
Step #5 - "Build Uploader Image": 8973eb85275f: Pull complete
Step #7 - "Build E2E Image": 66b6d86e5b33: Pull complete
Step #5 - "Build Uploader Image": f9afc3cc0135: Pull complete
Step #7 - "Build E2E Image": 90062ecd5dec: Pull complete
Step #7 - "Build E2E Image": Digest: sha256:ad4b34f02e52164df83182a2a05074b5288d6e6bcc2dfa0ce3d6fa43ec8b557f
Step #7 - "Build E2E Image": Status: Downloaded newer image for maven:3.8.7-eclipse-temurin-17-focal
Step #7 - "Build E2E Image": ---> 896b49b4d0b7
Step #7 - "Build E2E Image": Step 2/14 : RUN apt-get update && apt-get install -y jq python3.8 python3-pip
Step #0 - "Launch HAPI Source Server": Pulling db (postgres:)...
Step #2 - "Launch Sink Server JDBC": latest: Pulling from hapiproject/hapi
Step #5 - "Build Uploader Image": 39312d8b4ab7: Pull complete
Step #4 - "Compile Bunsen and Pipeline": a7203ca35e75: Pull complete
Step #1 - "Launch Sink Server Search": latest: Pulling from hapiproject/hapi
Step #5 - "Build Uploader Image": Digest: sha256:b53f496ca43e5af6994f8e316cf03af31050bf7944e0e4a308ad86c001cf028b
Step #5 - "Build Uploader Image": Status: Downloaded newer image for python:3.7-slim
Step #5 - "Build Uploader Image": ---> a255ffcb469f
Step #5 - "Build Uploader Image": Step 2/10 : WORKDIR /uploader
Step #0 - "Launch HAPI Source Server": latest: Pulling from library/postgres
Step #4 - "Compile Bunsen and Pipeline": 3337662e6dc9: Pull complete
Step #4 - "Compile Bunsen and Pipeline": 81485058ab89: Pull complete
Step #4 - "Compile Bunsen and Pipeline": b548970362bb: Pull complete
Step #4 - "Compile Bunsen and Pipeline": dbd02ad382f5: Pull complete
Step #7 - "Build E2E Image": ---> Running in 6954d3a440c4
Step #5 - "Build Uploader Image": ---> Running in 04e47dd81655
Step #4 - "Compile Bunsen and Pipeline": Digest: sha256:3a9c30b3af6278a8ae0007d3a3bf00fff80ec3ed7ae4eb9bfa1772853101549b
Step #4 - "Compile Bunsen and Pipeline": Status: Downloaded newer image for maven:3.8.5-openjdk-17
Step #4 - "Compile Bunsen and Pipeline": docker.io/library/maven:3.8.5-openjdk-17
Step #5 - "Build Uploader Image": Removing intermediate container 04e47dd81655
Step #5 - "Build Uploader Image": ---> d144d0a443e7
Step #5 - "Build Uploader Image": Step 3/10 : COPY ./ ./
Step #5 - "Build Uploader Image": ---> 26df0c76b838
Step #5 - "Build Uploader Image": Step 4/10 : RUN pip install -r requirements.txt
Step #5 - "Build Uploader Image": ---> Running in d53ddf92cb9b
Step #7 - "Build E2E Image": Get:1 http://archive.ubuntu.com/ubuntu focal InRelease [265 kB]
Step #7 - "Build E2E Image": Get:2 http://security.ubuntu.com/ubuntu focal-security InRelease [128 kB]
Step #7 - "Build E2E Image": Get:3 http://archive.ubuntu.com/ubuntu focal-updates InRelease [128 kB]
Step #7 - "Build E2E Image": Get:4 http://archive.ubuntu.com/ubuntu focal-backports InRelease [128 kB]
Step #7 - "Build E2E Image": Get:5 http://archive.ubuntu.com/ubuntu focal/restricted amd64 Packages [33.4 kB]
Step #7 - "Build E2E Image": Get:6 http://archive.ubuntu.com/ubuntu focal/multiverse amd64 Packages [177 kB]
Step #7 - "Build E2E Image": Get:7 http://archive.ubuntu.com/ubuntu focal/universe amd64 Packages [11.3 MB]
Step #7 - "Build E2E Image": Get:8 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [1,276 kB]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Error stacktraces are turned on.
Step #4 - "Compile Bunsen and Pipeline": [INFO] Scanning for projects...
Step #7 - "Build E2E Image": Get:9 http://archive.ubuntu.com/ubuntu focal/main amd64 Packages [1,275 kB]
Step #7 - "Build E2E Image": Get:10 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [4,570 kB]
Step #7 - "Build E2E Image": Get:11 http://archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [4,289 kB]
Step #7 - "Build E2E Image": Get:12 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [4,107 kB]
Step #7 - "Build E2E Image": Get:13 http://archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [33.5 kB]
Step #7 - "Build E2E Image": Get:14 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1,566 kB]
Step #7 - "Build E2E Image": Get:15 http://archive.ubuntu.com/ubuntu focal-backports/main amd64 Packages [55.2 kB]
Step #7 - "Build E2E Image": Get:16 http://archive.ubuntu.com/ubuntu focal-backports/universe amd64 Packages [28.6 kB]
Step #7 - "Build E2E Image": Get:17 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [4,137 kB]
Step #7 - "Build E2E Image": Get:18 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [30.9 kB]
Step #5 - "Build Uploader Image": Collecting google-auth
Step #5 - "Build Uploader Image": Downloading google_auth-2.36.0-py2.py3-none-any.whl (209 kB)
Step #5 - "Build Uploader Image": ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 209.5/209.5 kB 5.7 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Collecting mock
Step #5 - "Build Uploader Image": Downloading mock-5.1.0-py3-none-any.whl (30 kB)
Step #5 - "Build Uploader Image": Collecting requests
Step #5 - "Build Uploader Image": Downloading requests-2.31.0-py3-none-any.whl (62 kB)
Step #5 - "Build Uploader Image": ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 8.0 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Collecting cachetools<6.0,>=2.0.0
Step #5 - "Build Uploader Image": Downloading cachetools-5.5.0-py3-none-any.whl (9.5 kB)
Step #5 - "Build Uploader Image": Collecting pyasn1-modules>=0.2.1
Step #5 - "Build Uploader Image": Downloading pyasn1_modules-0.3.0-py2.py3-none-any.whl (181 kB)
Step #5 - "Build Uploader Image": ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 181.3/181.3 kB 12.3 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Collecting rsa<5,>=3.1.4
Step #5 - "Build Uploader Image": Downloading rsa-4.9-py3-none-any.whl (34 kB)
Step #5 - "Build Uploader Image": Collecting charset-normalizer<4,>=2
Step #5 - "Build Uploader Image": Downloading charset_normalizer-3.4.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (138 kB)
Step #4 - "Compile Bunsen and Pipeline": [INFO] ------------------------------------------------------------------------
Step #4 - "Compile Bunsen and Pipeline": [INFO] Reactor Build Order:
Step #4 - "Compile Bunsen and Pipeline": [INFO]
Step #4 - "Compile Bunsen and Pipeline": [INFO] root [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Bunsen Parent [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Extension Structure Definitions [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Bunsen Core [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Bunsen Core R4 [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Bunsen Core Stu3 [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Bunsen Avro [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] FHIR Analytics [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO] common [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] batch [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] streaming [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] controller [jar]
Step #4 - "Compile Bunsen and Pipeline": [INFO] coverage [pom]
Step #4 - "Compile Bunsen and Pipeline": [INFO]
Step #4 - "Compile Bunsen and Pipeline": [INFO] Using the MultiThreadedBuilder implementation with a thread count of 32
Step #5 - "Build Uploader Image": ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 138.3/138.3 kB 9.5 MB/s eta 0:00:00
Step #4 - "Compile Bunsen and Pipeline": [INFO]
Step #4 - "Compile Bunsen and Pipeline": [INFO] -------------------< com.google.fhir.analytics:root >-------------------
Step #4 - "Compile Bunsen and Pipeline": [INFO] Building root 0.2.7-SNAPSHOT [1/13]
Step #4 - "Compile Bunsen and Pipeline": [INFO] --------------------------------[ pom ]---------------------------------
Step #7 - "Build E2E Image": Fetched 33.6 MB in 4s (8,134 kB/s)
Step #5 - "Build Uploader Image": Collecting certifi>=2017.4.17
Step #5 - "Build Uploader Image": Downloading certifi-2024.8.30-py3-none-any.whl (167 kB)
Step #5 - "Build Uploader Image": ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 167.3/167.3 kB 10.1 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Collecting urllib3<3,>=1.21.1
Step #5 - "Build Uploader Image": Downloading urllib3-2.0.7-py3-none-any.whl (124 kB)
Step #5 - "Build Uploader Image": ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 124.2/124.2 kB 9.2 MB/s eta 0:00:00
Step #4 - "Compile Bunsen and Pipeline": [INFO]
Step #4 - "Compile Bunsen and Pipeline": [INFO] --- jacoco-maven-plugin:0.8.12:prepare-agent (default) @ root ---
Step #5 - "Build Uploader Image": Collecting idna<4,>=2.5
Step #5 - "Build Uploader Image": Downloading idna-3.10-py3-none-any.whl (70 kB)
Step #5 - "Build Uploader Image": ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 70.4/70.4 kB 11.4 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Collecting pyasn1<0.6.0,>=0.4.6
Step #5 - "Build Uploader Image": Downloading pyasn1-0.5.1-py2.py3-none-any.whl (84 kB)
Step #5 - "Build Uploader Image": ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 84.9/84.9 kB 13.7 MB/s eta 0:00:00
Step #5 - "Build Uploader Image": Installing collected packages: urllib3, pyasn1, mock, idna, charset-normalizer, certifi, cachetools, rsa, requests, pyasn1-modules, google-auth
Step #4 - "Compile Bunsen and Pipeline": [INFO] argLine set to -javaagent:/root/.m2/repository/org/jacoco/org.jacoco.agent/0.8.12/org.jacoco.agent-0.8.12-runtime.jar=destfile=/workspace/target/jacoco.exec
Step #4 - "Compile Bunsen and Pipeline": [INFO]
Step #4 - "Compile Bunsen and Pipeline": [INFO] --- maven-install-plugin:2.4:install (default-install) @ root ---
Step #7 - "Build E2E Image": Reading package lists...
Step #5 - "Build Uploader Image": Successfully installed cachetools-5.5.0 certifi-2024.8.30 charset-normalizer-3.4.0 google-auth-2.36.0 idna-3.10 mock-5.1.0 pyasn1-0.5.1 pyasn1-modules-0.3.0 requests-2.31.0 rsa-4.9 urllib3-2.0.7
Step #5 - "Build Uploader Image": �[91mWARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
Step #4 - "Compile Bunsen and Pipeline": [INFO] Installing /workspace/pom.xml to /root/.m2/repository/com/google/fhir/analytics/root/0.2.7-SNAPSHOT/root-0.2.7-SNAPSHOT.pom
Step #4 - "Compile Bunsen and Pipeline": [INFO]
Step #4 - "Compile Bunsen and Pipeline": [INFO] ------------------< com.cerner.bunsen:bunsen-parent >-------------------
Step #4 - "Compile Bunsen and Pipeline": [INFO] Building Bunsen Parent 0.5.14-SNAPSHOT [2/13]
Step #4 - "Compile Bunsen and Pipeline": [INFO] --------------------------------[ pom ]---------------------------------
Step #4 - "Compile Bunsen and Pipeline": [INFO]
Step #4 - "Compile Bunsen and Pipeline": [INFO] ----------------< com.google.fhir.analytics:pipelines >-----------------
Step #4 - "Compile Bunsen and Pipeline": [INFO] Building FHIR Analytics 0.2.7-SNAPSHOT [3/13]
Step #4 - "Compile Bunsen and Pipeline": [INFO] --------------------------------[ pom ]---------------------------------
Step #5 - "Build Uploader Image": �[0m�[91m
Step #5 - "Build Uploader Image": [notice] A new release of pip is available: 23.0.1 -> 24.0
Step #5 - "Build Uploader Image": [notice] To update, run: pip install --upgrade pip
Step #7 - "Build E2E Image": Reading package lists...
Step #7 - "Build E2E Image": Building dependency tree...
Step #7 - "Build E2E Image": Reading state information...
Step #7 - "Build E2E Image": The following additional packages will be installed:
Step #7 - "Build E2E Image": build-essential cpp cpp-9 dirmngr dpkg-dev fakeroot file g++ g++-9 gcc
Step #7 - "Build E2E Image": gcc-10-base gcc-9 gcc-9-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent
Step #7 - "Build E2E Image": gpg-wks-client gpg-wks-server gpgconf gpgsm libalgorithm-diff-perl
Step #7 - "Build E2E Image": libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan5 libassuan0
Step #7 - "Build E2E Image": libatomic1 libc-dev-bin libc6 libc6-dev libcc1-0 libcrypt-dev libdpkg-perl
Step #7 - "Build E2E Image": libexpat1 libexpat1-dev libfakeroot libfile-fcntllock-perl libgcc-9-dev
Step #7 - "Build E2E Image": libgcc-s1 libgomp1 libisl22 libitm1 libjq1 libksba8 liblocale-gettext-perl
Step #7 - "Build E2E Image": liblsan0 libmagic-mgc libmagic1 libmpc3 libmpdec2 libmpfr6 libnpth0 libonig5
Step #7 - "Build E2E Image": libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
Step #7 - "Build E2E Image": libpython3.8-minimal libpython3.8-stdlib libquadmath0 libreadline8
Step #7 - "Build E2E Image": libstdc++-9-dev libstdc++6 libtsan0 libubsan1 linux-libc-dev make manpages
Step #7 - "Build E2E Image": manpages-dev mime-support pinentry-curses python-pip-whl python3 python3-dev
Step #7 - "Build E2E Image": python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
Step #7 - "Build E2E Image": python3-setuptools python3-wheel python3.8-dev python3.8-minimal
Step #7 - "Build E2E Image": readline-common xz-utils zlib1g-dev
Step #7 - "Build E2E Image": Suggested packages:
Step #7 - "Build E2E Image": cpp-doc gcc-9-locales dbus-user-session libpam-systemd pinentry-gnome3 tor
Step #7 - "Build E2E Image": debian-keyring g++-multilib g++-9-multilib gcc-9-doc gcc-multilib autoconf
Step #7 - "Build E2E Image": automake libtool flex bison gdb gcc-doc gcc-9-multilib parcimonie xloadimage
Step #7 - "Build E2E Image": scdaemon glibc-doc bzr libstdc++-9-doc make-doc man-browser pinentry-doc
Step #7 - "Build E2E Image": python3-doc python3-tk python3-venv python-setuptools-doc python3.8-venv
Step #7 - "Build E2E Image": python3.8-doc binfmt-support readline-doc
Step #7 - "Build E2E Image": The following NEW packages will be installed:
Step #7 - "Build E2E Image": build-essential cpp cpp-9 dirmngr dpkg-dev fakeroot file g++ g++-9 gcc gcc-9
Step #7 - "Build E2E Image": gcc-9-base gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client
Step #7 - "Build E2E Image": gpg-wks-server gpgconf gpgsm jq libalgorithm-diff-perl
Step #7 - "Build E2E Image": libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan5 libassuan0
Step #7 - "Build E2E Image": libatomic1 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdpkg-perl
Step #7 - "Build E2E Image": libexpat1-dev libfakeroot libfile-fcntllock-perl libgcc-9-dev libgomp1
Step #7 - "Build E2E Image": libisl22 libitm1 libjq1 libksba8 liblocale-gettext-perl liblsan0
Step #7 - "Build E2E Image": libmagic-mgc libmagic1 libmpc3 libmpdec2 libmpfr6 libnpth0 libonig5
Step #7 - "Build E2E Image": libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
Step #7 - "Build E2E Image": libpython3.8-minimal libpython3.8-stdlib libquadmath0 libreadline8
Step #7 - "Build E2E Image": libstdc++-9-dev libtsan0 libubsan1 linux-libc-dev make manpages manpages-dev
Step #7 - "Build E2E Image": mime-support pinentry-curses python-pip-whl python3 python3-dev
Step #7 - "Build E2E Image": python3-distutils python3-lib2to3 python3-minimal python3-pip
Step #7 - "Build E2E Image": python3-pkg-resources python3-setuptools python3-wheel python3.8
Step #7 - "Build E2E Image": python3.8-dev python3.8-minimal readline-common xz-utils zlib1g-dev
Step #7 - "Build E2E Image": The following packages will be upgraded:
Step #7 - "Build E2E Image": gcc-10-base libc6 libexpat1 libgcc-s1 libstdc++6
Step #7 - "Build E2E Image": 5 upgraded, 84 newly installed, 0 to remove and 79 not upgraded.
Step #7 - "Build E2E Image": Need to get 65.4 MB of archives.
Step #7 - "Build E2E Image": After this operation, 263 MB of additional disk space will be used.
Step #7 - "Build E2E Image": Get:1 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gcc-10-base amd64 10.5.0-1ubuntu1~20.04 [20.8 kB]
Step #1 - "Launch Sink Ser
...
[Logs truncated due to log size limitations. For full logs, see https://storage.cloud.google.com/cloud-build-gh-logs/log-5f0605a7-ec38-4103-8151-75f62225b668.txt.]
...
Pipeline FHIR-search mode with OpenMRS source": 20:04:08.781 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=16310
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:08.789 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=4050
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:08.897 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=5800
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:08.908 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=14550
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.026 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=7550
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.098 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=2300
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.185 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=11050
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": java.io.IOException: Could not read footer: java.lang.RuntimeException: file:/workspace/e2e-tests/controller-spark/dwh/controller_DWH_TIMESTAMP_2024_11_15T20_03_51_364262761Z/Encounter/ConvertResourceFn_Encounter_output-parquet-th-449-ts-1731701045500-r-66542.parquet is not a Parquet file (too small length: 0)
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver":
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.431 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=620
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.449 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=9310
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.450 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=12800
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.519 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=16320
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.600 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=4060
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.635 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=5810
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.678 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=14560
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.790 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=7560
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.810 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=2310
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:09.991 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=11060
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.114 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=630
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.172 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=12810
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.185 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=9320
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.257 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=16330
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.353 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=4070
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.368 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=5820
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": java.io.IOException: Could not read footer: java.lang.RuntimeException: file:/workspace/e2e-tests/controller-spark/dwh/controller_DWH_TIMESTAMP_2024_11_15T20_03_51_364262761Z/Observation/ConvertResourceFn_Observation_output-parquet-th-1516-ts-1731701048762-r-864001.parquet is not a Parquet file (too small length: 0)
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver":
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.398 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=14570
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.480 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=2320
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.523 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=7570
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.689 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=11070
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.838 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=9330
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.839 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=12820
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.850 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=640
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:10.963 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=16340
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.060 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=4080
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.090 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=14580
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.094 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=5830
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.158 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=2330
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.284 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=7580
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.457 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=11080
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.536 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=12830
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.553 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=9340
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.610 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=650
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.761 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=16350
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.813 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=5840
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.853 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=4090
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.892 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=14590
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:11.914 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=2340
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.050 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=7590
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.140 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=11090
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.313 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=9350
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.336 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=12840
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.445 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=660
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.553 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=16360
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.588 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=5850
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.627 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=14600
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.627 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=4100
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.677 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=2350
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.794 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=7600
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:12.973 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=11100
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.073 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=9360
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.133 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=12850
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.260 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=670
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.310 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=16370
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.361 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=4110
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.372 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=5860
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.399 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=14610
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.412 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=2360
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.499 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=7610
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.681 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=11110
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": SUCCESSE2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Total patients:
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Total encounters:
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Total observations:
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Total patient flat rows: 0
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Total encounter flat rows: 0
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Total observation flat rows: 0
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Mismatch in count of records
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Actual total patients: , expected total: 79
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Actual total encounters: , expected total: 4006
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Total observations: , expected total: 17279
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Actual total materialized view patients: 0, expected total: 106
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Actual total materialized view encounters: 0, expected total: 4006
Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver": E2E TEST FOR CONTROLLER SPARK DEPLOYMENT: Actual total materialized view observations: 0, expected total: 17279
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.751 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=9370
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.887 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=12860
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:13.983 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=680
Finished Step #21 - "Run E2E Test for Dockerized Controller and Spark Thriftserver"
ERROR
ERROR: build step 21 "us-docker.pkg.dev/cloud-build-fhir/fhir-analytics/e2e-tests/controller-spark:6baa6e6" failed: step exited with non-zero status: 2
Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source": 20:04:14.045 [direct-runner-worker] INFO c.g.fhir.analytics.FetchResources com.google.fhir.analytics.FetchResources$SearchFn.processElement:137 - Fetching 10 resources for state Observation_main; URL= http://openmrs:8080/openmrs/ws/fhir2/R4?_getpages=6f29cbb6-6c39-40ca-a69c-e25f50dee8f7&_getpagesoffset=16380
Finished Step #30 - "Run Batch Pipeline FHIR-search mode with OpenMRS source"
Step #2 - "Launch Sink Server JDBC": �[1A�[2K
Creating sink-server-jdbc ... �[32mdone�[0m
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Step #0 - "Launch HAPI Source Server": �[2A�[2K
Creating hapi-fhir-db ... �[32mdone�[0m
�[2B�[1A�[2K
Creating hapi-server ... �[32mdone�[0m
�[1B
Step #1 - "Launch Sink Server Search": �[1A�[2K
Creating sink-server-search ... �[32mdone�[0m
�[1B
Step #19 - "Launch HAPI FHIR Sink Server Controller": �[1A�[2K
Creating sink-server-controller ... �[32mdone�[0m
�[1B
Step #20 - "Bring up controller and Spark containers": �[1A�[2K
Creating pipeline-controller ... �[32mdone�[0m
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Step #25 - "Launch OpenMRS Server and HAPI FHIR Sink Server for OpenMRS": �[1A�[2K
Creating openmrs ... �[32mdone�[0m
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Build Log: https://storage.cloud.google.com/cloud-build-gh-logs/log-5f0605a7-ec38-4103-8151-75f62225b668.txt
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