ramanchada-api

A web API for the RamanChada 2 Raman spectroscopy harmonisation library, incorporating the AMBIT/eNanoMapper data model.

Developer notes

Installation

Install Poetry, then run:

poetry install

Run a development server

poetry run dev

Work in a shell with installed package and dependencies

poetry shell

Exit with exit or Ctrl-D.

Add a dependency

poetry add <pkgname>

Run the tests

poetry run pytest

Update the dependencies

To update the dependencies to compatible versions per pyproject.toml specifications:

poetry update

Note that this does not update the submodules: see below how to update them.

Test the Docker image

docker build -t ramanchada-api:latest .
docker run -it --rm -p 127.0.0.1:8000:80 ramanchada-api

Update the submodules

Add and commit or stash any uncommitted changes, then run:

git submodule update --remote
poetry lock --no-update
git add extern poetry.lock
git commit -m "Pull the latest commit for the submodules"
git push

Run a development server (old)

uvicorn src.rcapi.main:app --reload