Skip to content
@harmslab

Harms Lab @ University of Oregon

Software projects created by members of the the Harms lab at the University of Oregon

Pinned Loading

  1. pytc pytc Public

    python program for analyzing isothermal titration calorimetry data

    Python 28 9

  2. epistasis epistasis Public

    A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

    Python 33 11

  3. latticegpm latticegpm Public

    Python package for building fitness landscapes from protein lattice models

    Python 2 4

  4. pdbtools pdbtools Public

    A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files

    Python 172 66

  5. gpmap gpmap Public

    A Python API for managing genotype-phenotype map data

    Python 11 8

  6. latticeproteins latticeproteins Public

    2d protein lattice model simulator in Python

    Python 2 7

Repositories

Showing 10 of 59 repositories
  • dataprob Public

    Library for fitting models using a likelihood framework.

    harmslab/dataprob’s past year of commit activity
    Python 4 MIT 1 0 0 Updated Sep 18, 2024
  • linkage Public

    package for fitting thermodynamic linkage models to experimental data

    harmslab/linkage’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 1 Updated Sep 17, 2024
  • ellipticbn Public

    tool for measuring ellipticity of cucurbituril macrocycles

    harmslab/ellipticbn’s past year of commit activity
    HTML 1 MIT 1 0 0 Updated Jul 16, 2024
  • topiary Public

    Python framework for doing ancestral sequence reconstruction

    harmslab/topiary’s past year of commit activity
    Python 36 MIT 6 9 1 Updated Jul 8, 2024
  • setup_md Public

    Files and scripts used to set up MD simulations in the Harms Lab

    harmslab/setup_md’s past year of commit activity
    Python 0 MIT 1 0 0 Updated May 14, 2024
  • eee Public

    ensemble epistasis engine

    harmslab/eee’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Nov 16, 2023
  • gpseer Public

    A tool to predict missing data in sparsely sampled genotype-phenotype maps

    harmslab/gpseer’s past year of commit activity
    Python 6 3 1 0 Updated Aug 18, 2023
  • gpmap Public

    A Python API for managing genotype-phenotype map data

    harmslab/gpmap’s past year of commit activity
    Python 11 8 1 3 Updated Aug 18, 2023
  • epistasis Public

    A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

    harmslab/epistasis’s past year of commit activity
    Python 33 Unlicense 11 7 0 Updated Aug 18, 2023
  • website Public

    Website for the lab

    harmslab/website’s past year of commit activity
    HTML 0 MIT 2 0 0 Updated Jan 16, 2023

Top languages

Loading…

Most used topics

Loading…