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@harvardinformatics

Harvard Informatics

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  1. learning-bioinformatics-at-home learning-bioinformatics-at-home Public

    resources for learning bioinformatics

    984 176

  2. JAuth JAuth Public

    Java GUI client to generate Google authentication codes

    Java 200 50

  3. bioinformatics-coffee-hour bioinformatics-coffee-hour Public

    Short lessons from FAS Informatics coffee hour

    HTML 148 48

  4. ATAC-seq ATAC-seq Public

    Python 126 39

  5. snpArcher snpArcher Public

    Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

    Python 77 33

  6. GenomeAnnotation GenomeAnnotation Public

    Best practices and workflow for genome annotation

    Python 73 13

Repositories

Showing 10 of 169 repositories
  • ifxvue Public

    Harvard FAS Informatics Vue JS components

    harvardinformatics/ifxvue’s past year of commit activity
    Vue 0 GPL-2.0 0 0 9 Updated Mar 3, 2025
  • AnnotationRNAseqAssembly Public

    Snakemake workflow for assembling transcript models from RNA-seq reads

    harvardinformatics/AnnotationRNAseqAssembly’s past year of commit activity
    Python 1 0 0 0 Updated Mar 3, 2025
  • specify_web Public

    Conversion of HUH specify_web application to git

    harvardinformatics/specify_web’s past year of commit activity
    PHP 3 0 0 0 Updated Mar 3, 2025
  • cactus-snakemake Public

    guidelines for running progressive CACTUS to produce a whole genome alignment required for genome annotation tools that leverage WGA

    harvardinformatics/cactus-snakemake’s past year of commit activity
    Python 3 1 2 0 Updated Mar 2, 2025
  • AnnotationBRAKER Public

    Workflows and code for generating and filtering genome annotations with BRAKER

    harvardinformatics/AnnotationBRAKER’s past year of commit activity
    Python 3 0 0 0 Updated Feb 28, 2025
  • informatics-website Public

    FAS Informatics website

    harvardinformatics/informatics-website’s past year of commit activity
    Python 1 MIT 1 4 0 Updated Feb 28, 2025
  • github-intro Public

    A hands-on introduction to git/github

    harvardinformatics/github-intro’s past year of commit activity
    0 MIT 15 0 2 Updated Feb 27, 2025
  • NEMO-CE Public

    Copy of NEMO

    harvardinformatics/NEMO-CE’s past year of commit activity
    Python 0 0 0 0 Updated Feb 25, 2025
  • AnnotationTOGA Public

    Guidelines for running TOGA and scripts for processing outputs

    harvardinformatics/AnnotationTOGA’s past year of commit activity
    Python 6 2 0 0 Updated Feb 20, 2025
  • GenomeAnnotation Public

    Best practices and workflow for genome annotation

    harvardinformatics/GenomeAnnotation’s past year of commit activity
    Python 73 13 1 0 Updated Feb 19, 2025
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