tumopp is a fast and flexible tumor growth simulator. The core library is written in C++. It can be installed and run via R package.
- Unix-like environment (macOS, Linux, WSL, MinGW on MSYS2, etc.)
- C++17 compiler (clang++ >= Apple LLVM 12, g++ >= 8)
- CMake (>= 3.15.0)
The following libraries are optional or automatically installed:
See tumopp R package.
The easiest way is to use Homebrew. The following command installs tumopp with its dependencies:
brew install heavywatal/tap/tumopp
You can manually install the latest version from source code to an arbitrary DESTINATION
:
git clone https://github.com/heavywatal/tumopp.git
cd tumopp/
DESTINATION=${HOME}/local
cmake -S . -B build -DCMAKE_INSTALL_PREFIX=$DESTINATION
cmake --build build -j 2
cmake --install build -j 2
PATH=${DESTINATION}/bin:$PATH
Example:
tumopp -h
tumopp -N20000 -D3 -Chex -k100 -d0.1 -m0.5 -o OUTPUT_DIR
- Online documentation generated with doxygen
- @ref params
Watal M. Iwasaki and Hideki Innan (2017) "Simulation Framework for Generating Intratumor Heterogeneity Patterns in a Cancer Cell Population" PLOS ONE 12(9): e0184229