TASTI: Taxa with Ancestral structure Species Tree Inference

This R package uses maximum likelihood methods to construct species trees from gene trees, with or without ancestral population structure.

Installation

Install from GitHub with:

library(devtools)
install_github("hillarykoch/TASTI")
library(TASTI)

Running TASTI

See the package vignette for an introduction to the main functions implemented in TASTI.

Citation

Koch, H., & DeGiorgio, M. (2020). Maximum likelihood estimation of species trees from gene trees in the presence of ancestral population structure. Genome biology and evolution, 12(2), 3977-3995.