Tracking_behaivor

Python and R script for analyzing mouse moving in behavior experiment

Getting Started

Requirement

• Python3

  thise pacakege is requried.

  • opencv-python=4.1.0.25=pypi_0
  • numpy
  • pandas
  • Pathlib
  • thinker
  • datetime

• R

  thise pacakege is requried.

  • sp
  • tidyverse
  • jsonlite
  • stringr

Installation

git clone https://github.com/hkrkizum/Tracking_behaivor.git

Preparation

Tracking_behaivor/
  ├─ .git/
  ├─ .gitignore
  ├─ README.md
  ├─ Videofiles/
  │   └─ test.mp4
  ├─ Setting/
  │   ├─ FileList/
  │   └─ Polygon/
  │       ├─ FileList/
  │       └─ Polygon/
  │           └─ polygon.csv
  ├─ TrackingData/
  └─ source/
     ├─ pythonfiles/
     │   ├─ Video_1file.py
     │   └─ CoreCode.py
     └─ Rfiles

Make Mask Poligon setting file

• 1st col: Number
• 2nd col: X
• 3rd col: Y

→　put in Setting/

Usage

A. 1 file tracking

1. Run tracking

python .\source\pythonfiles\Video_1file.py

• 1-1. pop up. when you select OK, you can choose video file on GUI.

• 1-2. when you select OK, you can choose CSV file on GUI.

• 1-3. Set threthold parameter. If you set blank, 35 will be used as default.

• 1-4. Analized data will be saved in TrackingData/ automatically.