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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 12 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 5

Repositories

Showing 10 of 174 repositories
  • member-ui Public

    Forms and service for HuBMAP user registration and profile edit

    hubmapconsortium/member-ui’s past year of commit activity
    HTML 0 MIT 0 10 4 Updated Nov 12, 2024
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 2 104 6 Updated Nov 12, 2024
  • pas-ftu-segmentation-pipeline Public
    hubmapconsortium/pas-ftu-segmentation-pipeline’s past year of commit activity
    Python 0 MIT 0 3 0 Updated Nov 12, 2024
  • hra-registrations Public

    Manually curated HRA Dataset Graphs

    hubmapconsortium/hra-registrations’s past year of commit activity
    HTML 1 MIT 0 13 0 Updated Nov 11, 2024
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools’s past year of commit activity
    Python 8 MIT 18 42 9 Updated Nov 11, 2024
  • py-hubmapbags Public

    Python package used to build the submission for the CFDE Search Portal

    hubmapconsortium/py-hubmapbags’s past year of commit activity
    Jupyter Notebook 1 2 20 4 Updated Nov 11, 2024
  • 3DCellComposer Public Forked from murphygroup/3DCellComposer

    3DCellComposer - A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation

    hubmapconsortium/3DCellComposer’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Nov 11, 2024
  • data-products-ui Public
    hubmapconsortium/data-products-ui’s past year of commit activity
    JavaScript 0 0 8 0 Updated Nov 11, 2024
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 12 MIT 2 201 30 Updated Nov 8, 2024
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 5 79 17 Updated Nov 8, 2024
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