ibest / GRC_Scripts Public

Executable R and Python scripts for the Genomics Resources Core

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Name		Name	Last commit message	Last commit date
Latest commit History 337 Commits
MiSeq_Pipeline		MiSeq_Pipeline
grcScriptsR/R		grcScriptsR/R
Illumina_demultiplexer.py		Illumina_demultiplexer.py
LICENSE		LICENSE
README.md		README.md
compare_fastq.py		compare_fastq.py
configure_ARC.R		configure_ARC.R
configure_Bowtie.R		configure_Bowtie.R
configure_Cap3.R		configure_Cap3.R
configure_Mapping.R		configure_Mapping.R
configure_Newbler.R		configure_Newbler.R
configure_htseqCount.R		configure_htseqCount.R
configure_mummer.R		configure_mummer.R
download_from_ncbi.py		download_from_ncbi.py
extract_fastq.py		extract_fastq.py
extract_mapped_reads.py		extract_mapped_reads.py
extract_unmapped_reads.py		extract_unmapped_reads.py
newbler_summary.R		newbler_summary.R
parse_flash.py		parse_flash.py
phiX_screen.sh		phiX_screen.sh
preproc_experiment		preproc_experiment
preproc_experiment.R		preproc_experiment.R
preproc_report		preproc_report
read_info.py		read_info.py
screen_duplicates_PE.py		screen_duplicates_PE.py
screen_duplicates_PE_sra.py		screen_duplicates_PE_sra.py